Wall clock time and date at job start Sun Mar 29 2020 22:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46823 * 2 1 4 4 N 1.46499 * 109.47141 * 179.97438 * 3 2 1 5 5 C 1.36848 * 120.00174 * 263.71503 * 4 3 2 6 6 H 1.08004 * 120.00050 * 195.43853 * 5 4 3 7 7 C 1.39025 * 120.00242 * 15.44134 * 5 4 3 8 8 N 1.31385 * 120.00220 * 33.07357 * 7 5 4 9 9 Si 1.86802 * 120.00085 * 213.07902 * 7 5 4 10 10 H 1.48502 * 109.47101 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47266 * 119.99497 * 9 7 5 12 12 H 1.48496 * 109.47012 * 239.99681 * 9 7 5 13 13 C 1.34777 * 119.99833 * 83.70981 * 4 3 2 14 14 O 1.21743 * 120.00382 * 183.98599 * 13 4 3 15 15 C 1.46514 * 119.99939 * 3.99320 * 13 4 3 16 16 O 1.34922 * 125.99505 * 354.44194 * 15 13 4 17 17 C 1.33967 * 109.37874 * 179.97438 * 16 15 13 18 18 C 1.35164 * 108.78023 * 359.76245 * 17 16 15 19 19 C 1.36675 * 125.99636 * 174.39842 * 15 13 4 20 20 C 1.50700 * 126.64705 * 0.02562 * 19 15 13 21 21 H 1.08995 * 109.47461 * 59.99935 * 1 2 3 22 22 H 1.08999 * 109.47312 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47439 * 299.99395 * 1 2 3 24 24 H 1.08999 * 109.46962 * 240.00027 * 2 1 3 25 25 H 1.09001 * 109.46823 * 119.99903 * 2 1 3 26 26 H 1.08999 * 109.47329 * 60.00252 * 3 2 1 27 27 H 1.09003 * 109.47420 * 300.00128 * 3 2 1 28 28 H 0.96998 * 120.00352 * 180.02562 * 8 7 5 29 29 H 1.08000 * 125.60811 * 179.97438 * 17 16 15 30 30 H 1.07998 * 126.43734 * 180.25872 * 18 17 16 31 31 H 1.08998 * 109.47177 * 89.99551 * 20 19 15 32 32 H 1.09001 * 109.46745 * 329.99334 * 20 19 15 33 33 H 1.08999 * 109.47051 * 210.00236 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1887 1.5725 1.1789 6 1 5.2395 1.8219 1.1688 7 6 3.5308 1.3835 2.3889 8 7 2.5525 0.5108 2.4755 9 14 4.0376 2.3704 3.8918 10 1 5.1567 3.2783 3.5334 11 1 2.8828 3.1722 4.3700 12 1 4.4766 1.4447 4.9668 13 6 4.1793 1.3145 -1.1593 14 8 5.3945 1.2416 -1.1521 15 6 3.4498 1.2633 -2.4289 16 8 2.1087 1.2275 -2.5720 17 6 1.8017 1.1860 -3.8754 18 6 2.9471 1.1998 -4.5929 19 6 4.0086 1.2442 -3.6761 20 6 5.4793 1.2710 -4.0034 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 2.0932 0.3791 3.3196 29 1 0.8032 1.1510 -4.2854 30 1 3.0299 1.1788 -5.6695 31 1 5.8587 0.2505 -4.0554 32 1 6.0143 1.8184 -3.2273 33 1 5.6288 1.7637 -4.9641 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044379618.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:08 Heat of formation + Delta-G solvation = -32.122160 kcal Electronic energy + Delta-G solvation = -17545.896628 eV Core-core repulsion = 14766.186743 eV Total energy + Delta-G solvation = -2779.709885 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.48251 -40.17599 -37.40512 -34.85219 -34.23577 -33.26577 -31.16174 -28.77237 -27.52966 -26.34239 -23.44617 -22.38634 -22.18944 -20.36896 -19.08681 -18.25821 -17.35767 -17.09873 -16.52572 -16.02160 -15.39448 -15.25699 -14.94662 -14.31571 -14.06920 -13.92503 -13.78516 -13.70727 -13.36679 -13.05863 -12.72064 -12.58317 -12.51041 -12.24222 -12.10742 -12.03902 -11.29010 -10.92408 -10.52709 -10.49197 -9.79261 -9.37431 -8.42892 -5.89334 0.32478 1.35809 1.42617 1.56192 1.60321 2.04997 2.29857 2.34686 3.00848 3.05050 3.92215 4.00072 4.10698 4.32610 4.49966 4.63872 4.71462 4.76383 4.79124 4.82462 4.89469 5.01009 5.16873 5.24229 5.29779 5.33130 5.41491 5.53677 5.66435 5.95422 6.00075 6.19411 6.51836 7.08450 7.34024 7.94614 8.51410 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028242 B = 0.009445 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.202762 B = 2963.791781 C = 3763.560323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.128 4.128 3 C 0.133 3.867 4 N -0.428 5.428 5 C -0.365 4.365 6 H 0.076 0.924 7 C 0.019 3.981 8 N -0.842 5.842 9 Si 0.980 3.020 10 H -0.275 1.275 11 H -0.261 1.261 12 H -0.273 1.273 13 C 0.485 3.515 14 O -0.618 6.618 15 C -0.079 4.079 16 O -0.165 6.165 17 C -0.025 4.025 18 C -0.222 4.222 19 C -0.136 4.136 20 C -0.080 4.080 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.022 0.978 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.280 0.720 29 H 0.251 0.749 30 H 0.184 0.816 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 1.242 -8.875 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.166 4.166 3 C 0.010 3.990 4 N -0.143 5.143 5 C -0.492 4.492 6 H 0.094 0.906 7 C -0.189 4.189 8 N -0.477 5.477 9 Si 0.802 3.198 10 H -0.200 1.200 11 H -0.186 1.186 12 H -0.198 1.198 13 C 0.276 3.724 14 O -0.509 6.509 15 C -0.131 4.131 16 O -0.061 6.061 17 C -0.094 4.094 18 C -0.241 4.241 19 C -0.139 4.139 20 C -0.137 4.137 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.267 0.733 30 H 0.201 0.799 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.281 1.129 -8.405 11.177 hybrid contribution 0.534 0.193 0.724 0.920 sum -6.747 1.322 -7.681 10.309 Atomic orbital electron populations 1.21488 0.93968 1.01484 1.01282 1.21947 0.96803 0.96329 1.01539 1.21548 0.78687 0.98466 1.00292 1.44005 1.06828 1.58210 1.05223 1.19589 0.96672 1.49639 0.83265 0.90610 1.26010 0.96496 0.95370 1.00986 1.70096 1.23573 1.25877 1.28144 0.85136 0.78805 0.78746 0.77101 1.20009 1.18567 1.19827 1.16947 0.86589 0.86269 0.82594 1.90590 1.13920 1.60051 1.86345 1.22008 0.81055 1.14148 0.95868 1.84366 1.22559 1.70643 1.28520 1.25309 1.02203 1.02093 0.79776 1.21934 0.90518 1.09973 1.01629 1.20910 0.98687 1.03129 0.91208 1.20232 0.89277 1.02180 1.01993 0.92211 0.92344 0.93268 0.95907 0.89416 0.91816 0.91076 0.90944 0.73287 0.79885 0.91644 0.93072 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 9.91 71.98 0.71 -3.40 16 2 C -0.13 -5.54 5.37 30.59 0.16 -5.37 16 3 C 0.13 6.18 4.16 86.38 0.36 6.54 16 4 N -0.43 -23.56 2.63 -640.24 -1.68 -25.25 16 5 C -0.36 -21.19 9.23 84.10 0.78 -20.41 16 6 H 0.08 4.76 7.47 -2.91 -0.02 4.73 16 7 C 0.02 0.96 4.53 84.95 0.39 1.35 16 8 N -0.84 -42.67 9.13 21.68 0.20 -42.47 16 9 Si 0.98 41.08 29.66 68.60 2.03 43.11 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 12 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 13 C 0.48 26.73 7.54 86.40 0.65 27.38 16 14 O -0.62 -37.70 14.46 -4.49 -0.06 -37.76 16 15 C -0.08 -3.54 6.58 24.06 0.16 -3.39 16 16 O -0.17 -6.14 6.15 -5.46 -0.03 -6.17 16 17 C -0.03 -0.66 12.08 67.11 0.81 0.15 16 18 C -0.22 -6.14 10.83 22.07 0.24 -5.91 16 19 C -0.14 -5.16 6.20 -19.72 -0.12 -5.28 16 20 C -0.08 -2.84 9.76 71.24 0.70 -2.15 16 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.02 1.01 7.14 -2.39 -0.02 0.99 16 25 H 0.09 4.38 5.54 -2.39 -0.01 4.37 16 26 H 0.06 3.08 6.61 -2.39 -0.02 3.06 16 27 H 0.07 3.06 5.35 -2.39 -0.01 3.05 16 28 H 0.28 12.98 8.31 -92.71 -0.77 12.20 16 29 H 0.25 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.05 2.15 6.58 -2.39 -0.02 2.14 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -69.24 273.37 6.39 -62.85 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 1.11 Total: 16.17 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.83 Total: -10.48 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -1.49 Total: -67.72 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.10 Total: -43.93 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -69.24 6.39 -62.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044379618.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.724 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds