Wall clock time and date at job start Sun Mar 29 2020 22:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34511 * 125.79252 * 2 1 4 4 C 1.41386 * 106.84141 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.57786 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47139 * 220.00634 * 5 4 3 7 7 C 1.53002 * 109.46652 * 100.00335 * 5 4 3 8 8 N 1.46503 * 109.47152 * 340.00658 * 5 4 3 9 9 C 1.34774 * 119.99830 * 204.99567 * 8 5 4 10 10 O 1.21692 * 120.00018 * 0.02562 * 9 8 5 11 11 C 1.46376 * 120.00068 * 180.02562 * 9 8 5 12 12 H 1.08002 * 119.99693 * 0.02562 * 11 9 8 13 13 C 1.40041 * 120.00167 * 180.02562 * 11 9 8 14 14 N 1.30679 * 120.00142 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00039 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47108 * 59.99968 * 15 13 11 17 17 H 1.48500 * 109.47063 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47167 * 300.00042 * 15 13 11 19 19 C 1.34507 * 106.84010 * 0.02562 * 4 3 2 20 20 C 1.50703 * 125.78834 * 180.26118 * 19 4 3 21 21 O 1.34304 * 108.42311 * 359.97438 * 19 4 3 22 22 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47442 * 300.00243 * 1 2 3 24 24 H 1.09007 * 109.46556 * 60.00173 * 1 2 3 25 25 H 1.08000 * 126.57995 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47592 * 300.00021 * 7 5 4 27 27 H 1.09004 * 109.46757 * 60.00424 * 7 5 4 28 28 H 1.09007 * 109.46857 * 179.97438 * 7 5 4 29 29 H 0.97002 * 119.99893 * 25.00169 * 8 5 4 30 30 H 0.97000 * 120.00012 * 180.02562 * 14 13 11 31 31 H 1.08998 * 109.47395 * 179.71425 * 20 19 4 32 32 H 1.09004 * 109.47316 * 299.71258 * 20 19 4 33 33 H 1.08995 * 109.47160 * 59.71311 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0006 5 6 4.8733 1.4849 0.0003 6 1 5.6185 1.0411 -0.6599 7 6 5.4352 1.5678 1.4210 8 7 4.5414 2.8310 -0.4730 9 6 5.4940 3.6022 -1.0334 10 8 6.6298 3.1802 -1.1468 11 6 5.1625 4.9475 -1.5058 12 1 4.1546 5.3221 -1.4048 13 6 6.1523 5.7486 -2.0886 14 7 7.3719 5.2955 -2.2103 15 14 5.7294 7.4656 -2.6908 16 1 5.2319 8.2806 -1.5533 17 1 6.9430 8.1027 -3.2620 18 1 4.6771 7.3788 -3.7350 19 6 3.5813 -0.7123 0.0004 20 6 4.7705 -1.6380 0.0064 21 8 2.2924 -1.0895 0.0002 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.9666 2.1204 0.0004 26 1 4.6900 2.0116 2.0812 27 1 5.6822 0.5662 1.7730 28 1 6.3341 2.1844 1.4207 29 1 3.6359 3.1673 -0.3829 30 1 8.0575 5.8506 -2.6137 31 1 4.4260 -2.6721 0.0098 32 1 5.3747 -1.4593 -0.8831 33 1 5.3711 -1.4522 0.8968 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044731385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:14 Heat of formation + Delta-G solvation = -40.146269 kcal Electronic energy + Delta-G solvation = -16642.964349 eV Core-core repulsion = 13862.906513 eV Total energy + Delta-G solvation = -2780.057836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.39462 -37.56054 -34.86574 -32.84721 -32.50000 -31.66477 -29.38155 -29.18105 -26.05893 -24.63010 -22.80654 -21.17626 -19.31539 -19.01495 -17.02857 -16.15060 -16.08517 -15.30640 -14.47456 -14.24655 -13.77510 -13.35425 -13.29142 -13.11961 -12.78224 -12.65873 -12.57630 -12.25984 -12.13701 -11.56493 -11.48776 -11.44534 -10.95389 -10.92896 -10.47254 -10.37428 -10.20953 -9.27584 -8.81801 -7.93521 -7.57406 -7.45024 -6.15210 -4.60636 1.92293 2.86125 3.10930 3.17664 3.22312 3.24292 4.13128 4.62476 4.78237 4.89179 5.08961 5.23585 5.26603 5.43077 5.51397 5.60421 5.66547 5.78401 5.85282 5.94358 6.00826 6.17098 6.21420 6.37740 6.45560 6.70813 6.76085 6.92815 7.41008 7.46300 7.98110 8.17103 8.37850 9.05663 9.59353 10.63842 10.82776 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032932 B = 0.006048 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.027993 B = 4628.692859 C = 5221.668777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.030 4.030 3 C -0.193 4.193 4 C -0.163 4.163 5 C 0.220 3.780 6 H 0.082 0.918 7 C -0.151 4.151 8 N -0.758 5.758 9 C 0.557 3.443 10 O -0.581 6.581 11 C -0.546 4.546 12 H 0.066 0.934 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.023 4.023 20 C -0.070 4.070 21 O -0.178 6.178 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.146 0.854 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.379 0.621 30 H 0.268 0.732 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 -9.498 4.793 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.212 4.212 4 C -0.164 4.164 5 C 0.113 3.887 6 H 0.100 0.900 7 C -0.210 4.210 8 N -0.413 5.413 9 C 0.361 3.639 10 O -0.464 6.464 11 C -0.583 4.583 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.397 5.397 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.073 4.073 20 C -0.126 4.126 21 O -0.076 6.076 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.164 0.836 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.211 0.789 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.541 -10.072 4.639 14.629 hybrid contribution -0.688 1.266 -0.251 1.463 sum -10.230 -8.806 4.388 14.193 Atomic orbital electron populations 1.20228 0.85423 1.03426 1.03373 1.22243 0.93709 0.84236 1.07739 1.21358 0.92206 0.99358 1.08310 1.20575 0.96071 0.93240 1.06553 1.18754 0.90910 0.84100 0.94904 0.90016 1.22125 1.01499 1.00687 0.96657 1.46156 1.13232 1.14265 1.67666 1.18190 0.83498 0.85394 0.76850 1.90587 1.20815 1.74586 1.60423 1.20845 0.96780 0.98491 1.42179 0.91596 1.25689 0.94362 0.99128 0.93942 1.70014 1.01539 1.35782 1.32399 0.86454 0.78456 0.82429 0.79503 1.19319 1.20566 1.19331 1.22039 0.83052 0.94106 1.08102 1.20285 0.91464 0.97007 1.03886 1.83908 1.16312 1.34938 1.72468 0.91041 0.90002 0.89906 0.83606 0.93326 0.93366 0.91553 0.78913 0.92114 0.91076 0.89596 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.42 36.00 0.38 -0.27 16 2 C -0.03 -0.42 7.32 -35.63 -0.26 -0.68 16 3 C -0.19 -3.09 9.97 -39.70 -0.40 -3.49 16 4 C -0.16 -2.86 5.30 -104.74 -0.55 -3.42 16 5 C 0.22 4.48 2.75 -69.08 -0.19 4.29 16 6 H 0.08 1.84 7.57 -51.93 -0.39 1.45 16 7 C -0.15 -2.81 9.47 37.16 0.35 -2.46 16 8 N -0.76 -17.64 5.03 -56.34 -0.28 -17.93 16 9 C 0.56 16.07 7.71 -12.99 -0.10 15.97 16 10 O -0.58 -18.87 14.68 5.20 0.08 -18.79 16 11 C -0.55 -15.65 9.54 -35.63 -0.34 -15.99 16 12 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 13 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 14 N -0.77 -23.25 11.83 55.55 0.66 -22.59 16 15 Si 0.91 20.35 29.56 -169.99 -5.02 15.33 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 C -0.02 -0.37 7.32 -35.63 -0.26 -0.63 16 20 C -0.07 -0.86 10.12 36.01 0.36 -0.49 16 21 O -0.18 -2.76 10.65 5.70 0.06 -2.70 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.15 2.17 7.11 -52.49 -0.37 1.79 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.75 7.47 -51.93 -0.39 0.36 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.38 7.93 6.99 -40.82 -0.29 7.65 16 30 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.94 7.47 -51.93 -0.39 0.55 16 LS Contribution 288.23 15.07 4.34 4.34 Total: -1.00 -34.97 288.23 -5.61 -40.58 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.33 Total: 6.53 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.11 Total: -4.77 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.37 Total: -40.52 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.14 Total: -21.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.97 -5.61 -40.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044731385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.436 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds