Wall clock time and date at job start Sun Mar 29 2020 22:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34511 * 125.79252 * 2 1 4 4 C 1.41386 * 106.84141 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.57786 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47139 * 220.00634 * 5 4 3 7 7 C 1.53002 * 109.46652 * 100.00335 * 5 4 3 8 8 N 1.46503 * 109.47152 * 340.00658 * 5 4 3 9 9 C 1.34774 * 119.99830 * 204.99567 * 8 5 4 10 10 O 1.21692 * 120.00018 * 0.02562 * 9 8 5 11 11 C 1.46376 * 120.00068 * 180.02562 * 9 8 5 12 12 H 1.08002 * 119.99693 * 0.02562 * 11 9 8 13 13 C 1.40041 * 120.00167 * 180.02562 * 11 9 8 14 14 N 1.30679 * 120.00142 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00039 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47108 * 59.99968 * 15 13 11 17 17 H 1.48500 * 109.47063 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47167 * 300.00042 * 15 13 11 19 19 C 1.34507 * 106.84010 * 0.02562 * 4 3 2 20 20 C 1.50703 * 125.78834 * 180.26118 * 19 4 3 21 21 O 1.34304 * 108.42311 * 359.97438 * 19 4 3 22 22 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47442 * 300.00243 * 1 2 3 24 24 H 1.09007 * 109.46556 * 60.00173 * 1 2 3 25 25 H 1.08000 * 126.57995 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47592 * 300.00021 * 7 5 4 27 27 H 1.09004 * 109.46757 * 60.00424 * 7 5 4 28 28 H 1.09007 * 109.46857 * 179.97438 * 7 5 4 29 29 H 0.97002 * 119.99893 * 25.00169 * 8 5 4 30 30 H 0.97000 * 120.00012 * 180.02562 * 14 13 11 31 31 H 1.08998 * 109.47395 * 179.71425 * 20 19 4 32 32 H 1.09004 * 109.47316 * 299.71258 * 20 19 4 33 33 H 1.08995 * 109.47160 * 59.71311 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0006 5 6 4.8733 1.4849 0.0003 6 1 5.6185 1.0411 -0.6599 7 6 5.4352 1.5678 1.4210 8 7 4.5414 2.8310 -0.4730 9 6 5.4940 3.6022 -1.0334 10 8 6.6298 3.1802 -1.1468 11 6 5.1625 4.9475 -1.5058 12 1 4.1546 5.3221 -1.4048 13 6 6.1523 5.7486 -2.0886 14 7 7.3719 5.2955 -2.2103 15 14 5.7294 7.4656 -2.6908 16 1 5.2319 8.2806 -1.5533 17 1 6.9430 8.1027 -3.2620 18 1 4.6771 7.3788 -3.7350 19 6 3.5813 -0.7123 0.0004 20 6 4.7705 -1.6380 0.0064 21 8 2.2924 -1.0895 0.0002 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.9666 2.1204 0.0004 26 1 4.6900 2.0116 2.0812 27 1 5.6822 0.5662 1.7730 28 1 6.3341 2.1844 1.4207 29 1 3.6359 3.1673 -0.3829 30 1 8.0575 5.8506 -2.6137 31 1 4.4260 -2.6721 0.0098 32 1 5.3747 -1.4593 -0.8831 33 1 5.3711 -1.4522 0.8968 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044731385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:14 Heat of formation + Delta-G solvation = -64.554423 kcal Electronic energy + Delta-G solvation = -16644.022766 eV Core-core repulsion = 13862.906513 eV Total energy + Delta-G solvation = -2781.116253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.60269 -39.58587 -36.64554 -34.60950 -33.88632 -33.34443 -30.91848 -30.30194 -28.18197 -25.78977 -24.29735 -22.63838 -21.05079 -20.63567 -18.88836 -17.50632 -17.38649 -17.27819 -16.16128 -15.94051 -15.13342 -15.01814 -14.51098 -14.36404 -14.16999 -14.07929 -13.62158 -13.50880 -13.39582 -13.24456 -13.14117 -12.72598 -12.68543 -12.63234 -12.46541 -12.04638 -11.99340 -10.92201 -10.57998 -9.85502 -9.51496 -9.06540 -8.28506 -6.85566 0.75258 1.39659 1.43443 1.54925 1.59296 2.00565 2.25038 2.48270 3.09811 3.62410 3.72931 3.83209 4.06498 4.35141 4.38430 4.48291 4.50147 4.61620 4.72645 4.76135 4.80322 4.86364 5.03282 5.04411 5.15969 5.25300 5.31624 5.40112 5.59809 5.88340 6.16741 6.25215 6.34039 6.86827 7.55282 8.49971 8.67959 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032932 B = 0.006048 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.027993 B = 4628.692859 C = 5221.668777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.019 4.019 3 C -0.220 4.220 4 C -0.191 4.191 5 C 0.223 3.777 6 H 0.051 0.949 7 C -0.141 4.141 8 N -0.748 5.748 9 C 0.540 3.460 10 O -0.629 6.629 11 C -0.576 4.576 12 H 0.085 0.915 13 C 0.030 3.970 14 N -0.821 5.821 15 Si 0.998 3.002 16 H -0.254 1.254 17 H -0.273 1.273 18 H -0.255 1.255 19 C -0.021 4.021 20 C -0.072 4.072 21 O -0.181 6.181 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.151 0.849 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.391 0.609 30 H 0.275 0.725 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.823 -9.359 5.006 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.068 4.068 3 C -0.239 4.239 4 C -0.193 4.193 5 C 0.117 3.883 6 H 0.069 0.931 7 C -0.200 4.200 8 N -0.402 5.402 9 C 0.345 3.655 10 O -0.516 6.516 11 C -0.612 4.612 12 H 0.103 0.897 13 C -0.185 4.185 14 N -0.451 5.451 15 Si 0.817 3.183 16 H -0.178 1.178 17 H -0.198 1.198 18 H -0.179 1.179 19 C -0.071 4.071 20 C -0.129 4.129 21 O -0.078 6.078 22 H 0.105 0.895 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.169 0.831 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.225 0.775 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.923 -9.965 4.880 16.287 hybrid contribution -0.017 1.121 -0.290 1.158 sum -11.940 -8.844 4.590 15.551 Atomic orbital electron populations 1.20463 0.81930 1.05011 1.04956 1.23039 0.95508 0.83201 1.05063 1.21503 0.91840 1.00389 1.10170 1.20365 0.95508 0.93933 1.09458 1.18705 0.91912 0.82772 0.94915 0.93095 1.22010 1.00019 1.02008 0.95934 1.45867 1.12815 1.15038 1.66432 1.18570 0.83604 0.86333 0.77023 1.90540 1.22907 1.75711 1.62464 1.21394 0.98096 0.98960 1.42781 0.89691 1.26960 0.93752 1.04476 0.93358 1.70183 1.03186 1.38276 1.33411 0.85076 0.78598 0.75309 0.79322 1.17818 1.19779 1.17912 1.22492 0.84013 0.93976 1.06594 1.20434 0.90358 0.97854 1.04205 1.83949 1.16220 1.35418 1.72258 0.89465 0.88043 0.88528 0.83090 0.92308 0.90191 0.94976 0.77531 0.91559 0.88538 0.90021 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.42 71.24 0.74 -0.32 16 2 C -0.02 -0.49 7.32 24.83 0.18 -0.31 16 3 C -0.22 -6.82 9.97 22.19 0.22 -6.60 16 4 C -0.19 -6.68 5.30 -19.94 -0.11 -6.78 16 5 C 0.22 9.34 2.75 44.25 0.12 9.46 16 6 H 0.05 2.43 7.57 -2.39 -0.02 2.41 16 7 C -0.14 -5.34 9.47 71.98 0.68 -4.66 16 8 N -0.75 -35.77 5.03 -450.38 -2.27 -38.04 16 9 C 0.54 32.36 7.71 86.36 0.67 33.03 16 10 O -0.63 -42.93 14.68 -4.32 -0.06 -42.99 16 11 C -0.58 -33.49 9.54 24.83 0.24 -33.25 16 12 H 0.08 4.44 7.85 -2.91 -0.02 4.41 16 13 C 0.03 1.68 5.50 85.30 0.47 2.15 16 14 N -0.82 -51.05 11.83 21.83 0.26 -50.79 16 15 Si 1.00 41.53 29.56 68.60 2.03 43.56 16 16 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 19 C -0.02 -0.63 7.32 24.83 0.18 -0.45 16 20 C -0.07 -1.68 10.12 71.24 0.72 -0.96 16 21 O -0.18 -5.23 10.65 -2.51 -0.03 -5.26 16 22 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.15 4.36 7.11 -2.91 -0.02 4.34 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.08 2.46 7.47 -2.38 -0.02 2.44 16 28 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.39 16.58 6.99 -92.71 -0.65 15.93 16 30 H 0.27 15.45 8.29 -92.71 -0.77 14.69 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.10 1.99 7.47 -2.39 -0.02 1.97 16 Total: -1.00 -78.52 288.23 4.52 -74.00 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.47 Total: 28.20 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.12 Total: -8.69 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -2.01 Total: -88.83 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.09 Total: -48.25 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -78.52 4.52 -74.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044731385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.448 kcal (2) G-P(sol) polarization free energy of solvation -78.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds