Wall clock time and date at job start Sun Mar 29 2020 21:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37102 * 119.99957 * 2 1 4 4 H 1.07997 * 120.00181 * 151.15123 * 3 2 1 5 5 C 1.38952 * 119.99942 * 331.15167 * 3 2 1 6 6 N 1.31410 * 119.99779 * 350.46928 * 5 3 2 7 7 Si 1.86790 * 120.00125 * 170.47366 * 5 3 2 8 8 H 1.48509 * 109.47336 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47556 * 119.99967 * 7 5 3 10 10 H 1.48505 * 109.47379 * 240.00298 * 7 5 3 11 11 C 1.34776 * 120.00142 * 179.72134 * 2 1 3 12 12 O 1.21292 * 119.99975 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00111 * 0.02562 * 11 2 1 14 14 C 1.50697 * 109.47207 * 180.02562 * 13 11 2 15 15 C 1.38265 * 119.98558 * 269.72473 * 14 13 11 16 16 C 1.38228 * 120.05030 * 179.72785 * 15 14 13 17 17 C 1.38219 * 120.02341 * 0.54821 * 16 15 14 18 18 C 1.38440 * 119.97699 * 359.72452 * 17 16 15 19 19 F 1.35097 * 120.02536 * 180.02562 * 18 17 16 20 20 C 1.38176 * 119.98982 * 89.99994 * 14 13 11 21 21 H 1.09005 * 109.46781 * 84.13353 * 1 2 3 22 22 H 1.08999 * 109.47235 * 204.12293 * 1 2 3 23 23 H 1.08997 * 109.47401 * 324.13048 * 1 2 3 24 24 H 0.97002 * 120.00117 * 179.97438 * 6 5 3 25 25 H 1.09007 * 109.46723 * 299.99814 * 13 11 2 26 26 H 1.08999 * 109.47367 * 59.99741 * 13 11 2 27 27 H 1.08001 * 119.97719 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.98762 * 180.27275 * 16 15 14 29 29 H 1.08003 * 120.01182 * 179.75000 * 17 16 15 30 30 H 1.07998 * 120.01017 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1299 1.2454 0.4513 5 6 1.5850 2.3160 -0.5806 6 7 0.4848 2.2082 -1.2910 7 14 2.3889 3.9864 -0.3515 8 1 3.6075 3.8390 0.4844 9 1 2.7618 4.5424 -1.6770 10 1 1.4365 4.9062 0.3209 11 6 2.1389 -1.1672 0.0057 12 8 3.3518 -1.1671 0.0061 13 6 1.3855 -2.4723 0.0114 14 6 2.3648 -3.6176 0.0178 15 6 2.8104 -4.1524 -1.1769 16 6 3.7130 -5.1993 -1.1727 17 6 4.1624 -5.7202 0.0261 18 6 3.7126 -5.1893 1.2230 19 9 4.1516 -5.6973 2.3953 20 6 2.8127 -4.1368 1.2174 21 1 -0.3633 0.1050 -1.0223 22 1 -0.3634 -0.9379 0.4200 23 1 -0.3634 0.8327 0.6021 24 1 0.0898 2.9962 -1.6960 25 1 0.7585 -2.5258 0.9015 26 1 0.7591 -2.5342 -0.8785 27 1 2.4561 -3.7493 -2.1141 28 1 4.0638 -5.6134 -2.1064 29 1 4.8645 -6.5409 0.0292 30 1 2.4614 -3.7215 2.1504 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049146.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:58 Heat of formation + Delta-G solvation = -52.450134 kcal Electronic energy + Delta-G solvation = -16177.466349 eV Core-core repulsion = 13273.414672 eV Total energy + Delta-G solvation = -2904.051677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.68711 -39.26369 -37.91076 -34.65928 -32.46051 -31.51032 -30.29237 -27.67090 -26.06581 -24.24761 -22.50896 -21.65538 -18.96969 -16.91156 -16.87347 -16.17079 -16.05155 -15.86611 -15.35142 -14.66178 -14.22623 -14.13792 -13.68422 -13.09743 -12.86468 -12.46966 -12.11839 -11.77732 -11.54313 -11.36643 -11.25791 -11.04241 -10.98080 -10.76682 -10.31271 -10.26300 -9.04433 -8.79848 -8.50820 -8.25691 -7.61290 -6.29829 -3.93102 1.41854 1.46539 3.15354 3.25475 3.32414 3.79732 3.88902 4.16712 4.44553 4.84293 4.97742 5.05042 5.12766 5.24442 5.45865 5.59188 5.76778 5.87183 5.92938 6.12384 6.25748 6.31428 6.37299 6.52040 6.79112 6.83084 7.13870 7.20633 7.56866 8.16718 8.48808 9.19168 9.41035 9.97866 10.73396 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.043260 B = 0.005589 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.091647 B = 5008.433193 C = 5135.753622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.448 5.448 3 C -0.305 4.305 4 H 0.095 0.905 5 C 0.032 3.968 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.453 3.547 12 O -0.580 6.580 13 C -0.101 4.101 14 C -0.014 4.014 15 C -0.117 4.117 16 C -0.092 4.092 17 C -0.166 4.166 18 C 0.094 3.906 19 F -0.146 7.146 20 C -0.142 4.142 21 H 0.066 0.934 22 H 0.030 0.970 23 H 0.058 0.942 24 H 0.266 0.734 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -11.451 1.103 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.168 5.168 3 C -0.433 4.433 4 H 0.113 0.887 5 C -0.171 4.171 6 N -0.523 5.523 7 Si 0.752 3.248 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.240 3.760 12 O -0.464 6.464 13 C -0.141 4.141 14 C -0.014 4.014 15 C -0.135 4.135 16 C -0.110 4.110 17 C -0.185 4.185 18 C 0.075 3.925 19 F -0.125 7.125 20 C -0.161 4.161 21 H 0.085 0.915 22 H 0.048 0.952 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.391 -11.305 1.052 11.361 hybrid contribution 0.223 0.903 0.217 0.956 sum -0.168 -10.402 1.269 10.480 Atomic orbital electron populations 1.21567 0.81438 0.98236 1.02524 1.43533 1.05358 1.04628 1.63268 1.19630 1.03161 0.85085 1.35474 0.88694 1.25393 0.96591 1.00221 0.94895 1.69944 1.20383 1.30137 1.31867 0.85873 0.79236 0.81473 0.78192 1.19246 1.20703 1.20693 1.19904 0.88056 0.84370 0.83623 1.90551 1.13832 1.86998 1.55004 1.20724 0.97142 0.92204 1.04041 1.19321 0.95846 0.94003 0.92259 1.21087 0.97967 0.96424 0.98015 1.20904 0.96616 0.96250 0.97223 1.21004 1.03250 1.02730 0.91471 1.17626 0.97872 0.95956 0.81063 1.91461 1.88333 1.86375 1.46300 1.20952 0.99070 0.96657 0.99389 0.91507 0.95183 0.92293 0.92354 0.89233 0.88822 0.85511 0.85334 0.85321 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.30 8.62 59.85 0.52 2.81 16 2 N -0.45 -11.38 3.00 -122.19 -0.37 -11.74 16 3 C -0.31 -8.54 9.15 -14.93 -0.14 -8.67 16 4 H 0.10 2.79 7.52 -52.49 -0.39 2.40 16 5 C 0.03 0.85 5.18 -17.47 -0.09 0.76 16 6 N -0.88 -23.54 10.88 55.50 0.60 -22.93 16 7 Si 0.93 20.85 29.56 -169.99 -5.03 15.83 16 8 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 C 0.45 10.87 7.62 -10.99 -0.08 10.79 16 12 O -0.58 -16.12 15.79 5.55 0.09 -16.03 16 13 C -0.10 -1.79 4.30 -29.04 -0.12 -1.91 16 14 C -0.01 -0.23 4.37 -104.64 -0.46 -0.69 16 15 C -0.12 -1.81 9.70 -39.57 -0.38 -2.19 16 16 C -0.09 -1.24 10.04 -39.59 -0.40 -1.63 16 17 C -0.17 -2.29 10.03 -39.51 -0.40 -2.68 16 18 C 0.09 1.47 7.30 -39.42 -0.29 1.19 16 19 F -0.15 -2.27 17.27 2.25 0.04 -2.23 16 20 C -0.14 -2.35 9.68 -39.51 -0.38 -2.74 16 21 H 0.07 1.52 7.19 -51.93 -0.37 1.14 16 22 H 0.03 0.52 6.23 -51.93 -0.32 0.19 16 23 H 0.06 1.33 7.69 -51.93 -0.40 0.93 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.09 1.38 7.37 -51.93 -0.38 1.00 16 26 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 27 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 28 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 30 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 268.40 15.07 4.04 4.04 Total: -1.00 -31.42 268.40 -5.96 -37.38 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.12 Total: 0.66 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.23 Total: -4.98 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.24 Total: -34.68 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.09 Total: -16.03 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.42 -5.96 -37.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049146.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.069 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds