Wall clock time and date at job start Sun Mar 29 2020 21:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37102 * 119.99957 * 2 1 4 4 H 1.07997 * 120.00181 * 151.15123 * 3 2 1 5 5 C 1.38952 * 119.99942 * 331.15167 * 3 2 1 6 6 N 1.31410 * 119.99779 * 350.46928 * 5 3 2 7 7 Si 1.86790 * 120.00125 * 170.47366 * 5 3 2 8 8 H 1.48509 * 109.47336 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47556 * 119.99967 * 7 5 3 10 10 H 1.48505 * 109.47379 * 240.00298 * 7 5 3 11 11 C 1.34776 * 120.00142 * 179.72134 * 2 1 3 12 12 O 1.21292 * 119.99975 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00111 * 0.02562 * 11 2 1 14 14 C 1.50697 * 109.47207 * 180.02562 * 13 11 2 15 15 C 1.38265 * 119.98558 * 269.72473 * 14 13 11 16 16 C 1.38228 * 120.05030 * 179.72785 * 15 14 13 17 17 C 1.38219 * 120.02341 * 0.54821 * 16 15 14 18 18 C 1.38440 * 119.97699 * 359.72452 * 17 16 15 19 19 F 1.35097 * 120.02536 * 180.02562 * 18 17 16 20 20 C 1.38176 * 119.98982 * 89.99994 * 14 13 11 21 21 H 1.09005 * 109.46781 * 84.13353 * 1 2 3 22 22 H 1.08999 * 109.47235 * 204.12293 * 1 2 3 23 23 H 1.08997 * 109.47401 * 324.13048 * 1 2 3 24 24 H 0.97002 * 120.00117 * 179.97438 * 6 5 3 25 25 H 1.09007 * 109.46723 * 299.99814 * 13 11 2 26 26 H 1.08999 * 109.47367 * 59.99741 * 13 11 2 27 27 H 1.08001 * 119.97719 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.98762 * 180.27275 * 16 15 14 29 29 H 1.08003 * 120.01182 * 179.75000 * 17 16 15 30 30 H 1.07998 * 120.01017 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1299 1.2454 0.4513 5 6 1.5850 2.3160 -0.5806 6 7 0.4848 2.2082 -1.2910 7 14 2.3889 3.9864 -0.3515 8 1 3.6075 3.8390 0.4844 9 1 2.7618 4.5424 -1.6770 10 1 1.4365 4.9062 0.3209 11 6 2.1389 -1.1672 0.0057 12 8 3.3518 -1.1671 0.0061 13 6 1.3855 -2.4723 0.0114 14 6 2.3648 -3.6176 0.0178 15 6 2.8104 -4.1524 -1.1769 16 6 3.7130 -5.1993 -1.1727 17 6 4.1624 -5.7202 0.0261 18 6 3.7126 -5.1893 1.2230 19 9 4.1516 -5.6973 2.3953 20 6 2.8127 -4.1368 1.2174 21 1 -0.3633 0.1050 -1.0223 22 1 -0.3634 -0.9379 0.4200 23 1 -0.3634 0.8327 0.6021 24 1 0.0898 2.9962 -1.6960 25 1 0.7585 -2.5258 0.9015 26 1 0.7591 -2.5342 -0.8785 27 1 2.4561 -3.7493 -2.1141 28 1 4.0638 -5.6134 -2.1064 29 1 4.8645 -6.5409 0.0292 30 1 2.4614 -3.7215 2.1504 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049146.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:58 Heat of formation + Delta-G solvation = -71.032972 kcal Electronic energy + Delta-G solvation = -16178.272161 eV Core-core repulsion = 13273.414672 eV Total energy + Delta-G solvation = -2904.857489 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.88090 -40.76882 -39.45063 -36.60918 -33.98437 -33.31865 -31.45660 -29.18554 -27.83069 -26.10784 -23.66840 -22.98115 -20.68595 -18.86963 -18.14686 -17.85188 -17.35627 -17.07650 -16.64672 -16.46087 -15.99202 -15.85810 -14.90505 -14.40469 -14.36973 -14.00504 -13.77972 -13.30123 -13.05161 -12.97015 -12.86049 -12.72946 -12.48952 -12.33347 -12.12158 -11.88374 -11.02915 -10.44091 -9.84683 -9.61001 -9.56986 -8.30807 -6.02928 0.23470 0.30591 1.35864 1.40511 1.53932 2.05073 2.27760 2.61813 3.08892 3.20028 3.30572 3.72146 3.87478 4.13240 4.19520 4.30291 4.41226 4.52934 4.65879 4.68259 4.98238 5.03741 5.14285 5.18191 5.38577 5.41833 5.46142 5.60355 5.99041 6.14022 6.50731 7.18657 7.48212 8.05131 8.70163 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.043260 B = 0.005589 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.091647 B = 5008.433193 C = 5135.753622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.466 5.466 3 C -0.343 4.343 4 H 0.065 0.935 5 C 0.000 4.000 6 N -0.897 5.897 7 Si 0.987 3.013 8 H -0.276 1.276 9 H -0.275 1.275 10 H -0.265 1.265 11 C 0.445 3.555 12 O -0.627 6.627 13 C -0.087 4.087 14 C -0.038 4.038 15 C -0.128 4.128 16 C -0.086 4.086 17 C -0.159 4.159 18 C 0.077 3.923 19 F -0.149 7.149 20 C -0.158 4.158 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.273 0.727 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.136 0.864 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 -12.349 0.468 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.185 5.185 3 C -0.471 4.471 4 H 0.083 0.917 5 C -0.202 4.202 6 N -0.536 5.536 7 Si 0.810 3.190 8 H -0.201 1.201 9 H -0.201 1.201 10 H -0.190 1.190 11 C 0.235 3.765 12 O -0.514 6.514 13 C -0.127 4.127 14 C -0.039 4.039 15 C -0.147 4.147 16 C -0.104 4.104 17 C -0.178 4.178 18 C 0.058 3.942 19 F -0.128 7.128 20 C -0.177 4.177 21 H 0.073 0.927 22 H 0.095 0.905 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.154 0.846 28 H 0.183 0.817 29 H 0.176 0.824 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.790 -12.213 0.416 12.246 hybrid contribution 0.367 1.117 0.394 1.240 sum -0.423 -11.096 0.809 11.133 Atomic orbital electron populations 1.21545 0.79388 1.00109 1.01837 1.43816 1.06749 1.04499 1.63478 1.19551 1.03015 0.87262 1.37294 0.91677 1.26094 0.97053 1.02943 0.94135 1.70010 1.20744 1.31262 1.31536 0.84980 0.78296 0.77509 0.78178 1.20062 1.20074 1.18971 1.20948 0.87930 0.85982 0.81677 1.90505 1.16201 1.88012 1.56663 1.20637 0.97094 0.88681 1.06260 1.19375 0.96920 0.94482 0.93115 1.21375 0.98375 0.97054 0.97848 1.21322 0.95270 0.95127 0.98653 1.21402 1.02795 1.02860 0.90705 1.17851 0.98303 0.96285 0.81761 1.91449 1.88358 1.86372 1.46603 1.21069 0.99804 0.97383 0.99451 0.92716 0.90530 0.93809 0.91761 0.86746 0.86551 0.84604 0.81693 0.82366 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.85 8.62 127.77 1.10 5.96 16 2 N -0.47 -23.89 3.00 -658.89 -1.98 -25.87 16 3 C -0.34 -19.68 9.15 84.04 0.77 -18.91 16 4 H 0.07 4.03 7.52 -2.91 -0.02 4.00 16 5 C 0.00 -0.02 5.18 84.93 0.44 0.42 16 6 N -0.90 -47.52 10.88 21.66 0.24 -47.28 16 7 Si 0.99 42.88 29.56 68.60 2.03 44.91 16 8 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 9 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 11 C 0.44 21.50 7.62 87.66 0.67 22.16 16 12 O -0.63 -35.75 15.79 -3.07 -0.05 -35.80 16 13 C -0.09 -2.97 4.30 29.10 0.12 -2.84 16 14 C -0.04 -1.27 4.37 -19.87 -0.09 -1.36 16 15 C -0.13 -3.74 9.70 22.27 0.22 -3.53 16 16 C -0.09 -2.06 10.04 22.26 0.22 -1.84 16 17 C -0.16 -3.97 10.03 22.31 0.22 -3.75 16 18 C 0.08 2.32 7.30 22.38 0.16 2.49 16 19 F -0.15 -4.51 17.27 44.97 0.78 -3.73 16 20 C -0.16 -5.16 9.68 22.31 0.22 -4.95 16 21 H 0.05 2.44 7.19 -2.38 -0.02 2.43 16 22 H 0.08 2.48 6.23 -2.39 -0.01 2.46 16 23 H 0.04 1.95 7.69 -2.39 -0.02 1.94 16 24 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 25 H 0.11 3.28 7.37 -2.38 -0.02 3.26 16 26 H 0.12 3.41 8.05 -2.39 -0.02 3.39 16 27 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 30 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -69.25 268.40 6.22 -63.03 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.15 Total: 10.90 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.06 Total: -6.14 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.74 Total: -73.15 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.05 Total: -35.80 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.78 Total: -3.73 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -69.25 6.22 -63.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049146.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.006 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds