Wall clock time and date at job start Sun Mar 29 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47565 * 2 1 4 4 C 1.36876 * 120.00283 * 80.55973 * 3 2 1 5 5 H 1.08000 * 120.00141 * 172.62679 * 4 3 2 6 6 C 1.39049 * 119.99502 * 352.62176 * 4 3 2 7 7 N 1.31358 * 120.00489 * 19.22518 * 6 4 3 8 8 Si 1.86800 * 119.99713 * 199.22335 * 6 4 3 9 9 H 1.48500 * 109.47458 * 89.99733 * 8 6 4 10 10 H 1.48496 * 109.47296 * 210.00365 * 8 6 4 11 11 H 1.48505 * 109.47150 * 330.00278 * 8 6 4 12 12 C 1.34777 * 119.99977 * 260.56004 * 3 2 1 13 13 O 1.21591 * 119.99976 * 180.82480 * 12 3 2 14 14 C 1.47735 * 119.99852 * 0.82931 * 12 3 2 15 15 C 1.39670 * 120.13759 * 217.82572 * 14 12 3 16 16 C 1.37919 * 119.89916 * 180.02562 * 15 14 12 17 17 C 1.38362 * 120.17926 * 359.97438 * 16 15 14 18 18 C 1.38571 * 120.27871 * 0.04221 * 17 16 15 19 19 F 1.35103 * 119.94982 * 180.02562 * 18 17 16 20 20 C 1.38185 * 120.10024 * 359.95924 * 18 17 16 21 21 H 1.08995 * 109.47644 * 161.65066 * 1 2 3 22 22 H 1.09002 * 109.47259 * 281.65605 * 1 2 3 23 23 H 1.08999 * 109.46713 * 41.65562 * 1 2 3 24 24 H 1.09000 * 109.47372 * 239.99541 * 2 1 3 25 25 H 1.09007 * 109.47098 * 119.99589 * 2 1 3 26 26 H 0.96995 * 120.00366 * 179.97438 * 7 6 4 27 27 H 1.07999 * 120.05080 * 359.97438 * 15 14 12 28 28 H 1.07997 * 119.91266 * 180.02562 * 16 15 14 29 29 H 1.08002 * 119.85706 * 180.02562 * 17 16 15 30 30 H 1.08000 * 120.09061 * 180.29590 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0633 2.0912 1.1693 5 1 2.5322 3.0639 1.1928 6 6 1.5051 1.5603 2.3269 7 7 1.2797 0.2692 2.4151 8 14 1.0758 2.6832 3.7567 9 1 -0.3194 3.1682 3.6036 10 1 1.2016 1.9318 5.0313 11 1 2.0039 3.8424 3.7717 12 6 2.4235 1.9526 -1.1514 13 8 2.8430 3.0939 -1.1490 14 6 2.3579 1.1924 -2.4164 15 6 3.3690 1.3295 -3.3702 16 6 3.3024 0.6179 -4.5498 17 6 2.2372 -0.2317 -4.7904 18 6 1.2299 -0.3731 -3.8494 19 9 0.1931 -1.2049 -4.0910 20 6 1.2849 0.3344 -2.6637 21 1 -0.3634 -0.9753 -0.3235 22 1 -0.3634 0.2076 1.0065 23 1 -0.3633 0.7678 -0.6831 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.8906 -0.1012 3.2227 27 1 4.2012 1.9924 -3.1847 28 1 4.0843 0.7234 -5.2872 29 1 2.1906 -0.7868 -5.7157 30 1 0.5021 0.2205 -1.9284 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:19 Heat of formation + Delta-G solvation = -41.692608 kcal Electronic energy + Delta-G solvation = -16858.633370 eV Core-core repulsion = 13955.048175 eV Total energy + Delta-G solvation = -2903.585195 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.88154 -41.20267 -38.97027 -37.25234 -34.09766 -32.27850 -31.54138 -31.04061 -27.36186 -24.71826 -23.88723 -23.53425 -21.22995 -19.07589 -18.54551 -17.91535 -17.24248 -16.91695 -16.59565 -16.36213 -15.91660 -15.60253 -15.28132 -14.56025 -14.28403 -13.96553 -13.62752 -13.48242 -13.17943 -12.86060 -12.79407 -12.71156 -12.31970 -12.13054 -11.95590 -11.75084 -10.99495 -10.56730 -9.93226 -9.85547 -9.69628 -8.23037 -5.95108 -0.08349 0.20377 1.35282 1.41738 1.52481 1.94398 2.21927 2.64619 2.94200 3.08570 3.28336 3.72707 3.88990 4.10891 4.19194 4.34007 4.42306 4.71470 4.74861 4.80365 4.98202 5.05818 5.09528 5.27654 5.32852 5.40992 5.61971 5.67976 5.89436 6.04622 6.49955 7.07801 7.38305 7.94021 8.55100 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.036725 B = 0.007964 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.230579 B = 3515.150897 C = 4090.087136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 N -0.432 5.432 4 C -0.346 4.346 5 H 0.077 0.923 6 C 0.010 3.990 7 N -0.865 5.865 8 Si 0.988 3.012 9 H -0.272 1.272 10 H -0.266 1.266 11 H -0.276 1.276 12 C 0.451 3.549 13 O -0.639 6.639 14 C -0.093 4.093 15 C -0.100 4.100 16 C -0.081 4.081 17 C -0.133 4.133 18 C 0.081 3.919 19 F -0.141 7.141 20 C -0.161 4.161 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.124 0.876 26 H 0.278 0.722 27 H 0.128 0.872 28 H 0.179 0.821 29 H 0.173 0.827 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 -5.886 -9.602 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 N -0.147 5.147 4 C -0.474 4.474 5 H 0.095 0.905 6 C -0.193 4.193 7 N -0.503 5.503 8 Si 0.812 3.188 9 H -0.197 1.197 10 H -0.190 1.190 11 H -0.201 1.201 12 C 0.242 3.758 13 O -0.530 6.530 14 C -0.097 4.097 15 C -0.120 4.120 16 C -0.099 4.099 17 C -0.152 4.152 18 C 0.062 3.938 19 F -0.120 7.120 20 C -0.180 4.180 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.141 0.859 26 H 0.089 0.911 27 H 0.146 0.854 28 H 0.196 0.804 29 H 0.191 0.809 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.448 -5.562 -9.379 10.913 hybrid contribution -0.453 0.548 0.976 1.208 sum -0.901 -5.013 -8.403 9.826 Atomic orbital electron populations 1.22111 0.96014 1.00182 1.01710 1.22464 0.95218 0.82347 1.03548 1.44016 1.52077 1.12737 1.05845 1.19713 1.38289 1.02021 0.87356 0.90473 1.25950 0.95352 0.97431 1.00594 1.69839 1.40774 1.10634 1.29047 0.85013 0.78744 0.78132 0.76940 1.19721 1.19028 1.20128 1.18552 0.85487 0.87246 0.84534 1.90544 1.54821 1.20534 1.87090 1.19846 0.96835 0.97722 0.95250 1.21429 0.97718 0.99269 0.93563 1.21316 0.98429 0.94017 0.96130 1.21623 0.93025 1.00578 0.99936 1.17676 0.87397 0.93322 0.95380 1.91480 1.56568 1.69482 1.94486 1.22112 1.00490 0.97314 0.98097 0.90911 0.92018 0.94987 0.92297 0.85875 0.91098 0.85420 0.80391 0.80911 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 8.17 71.98 0.59 -5.31 16 2 C 0.09 3.96 4.87 86.38 0.42 4.38 16 3 N -0.43 -23.04 2.64 -638.94 -1.69 -24.73 16 4 C -0.35 -19.72 9.44 84.10 0.79 -18.92 16 5 H 0.08 4.75 7.25 -2.91 -0.02 4.73 16 6 C 0.01 0.50 4.96 84.96 0.42 0.93 16 7 N -0.86 -42.44 8.01 21.68 0.17 -42.26 16 8 Si 0.99 41.39 29.59 68.60 2.03 43.42 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 C 0.45 23.84 7.31 86.75 0.63 24.47 16 13 O -0.64 -38.42 16.47 -4.00 -0.07 -38.49 16 14 C -0.09 -3.88 5.20 -20.09 -0.10 -3.98 16 15 C -0.10 -3.40 9.62 22.54 0.22 -3.18 16 16 C -0.08 -1.92 10.03 22.22 0.22 -1.70 16 17 C -0.13 -3.08 10.02 22.38 0.22 -2.86 16 18 C 0.08 2.45 7.29 22.34 0.16 2.61 16 19 F -0.14 -4.14 17.26 44.97 0.78 -3.37 16 20 C -0.16 -5.93 7.41 22.58 0.17 -5.76 16 21 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.06 2.76 6.19 -2.39 -0.01 2.75 16 23 H 0.03 1.33 6.75 -2.39 -0.02 1.32 16 24 H 0.06 2.46 5.10 -2.39 -0.01 2.45 16 25 H 0.12 6.09 5.43 -2.39 -0.01 6.08 16 26 H 0.28 12.61 8.31 -92.71 -0.77 11.84 16 27 H 0.13 4.37 8.04 -2.91 -0.02 4.35 16 28 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.15 5.70 3.15 -2.91 -0.01 5.69 16 Total: -1.00 -65.33 254.09 6.15 -59.18 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.17 Total: 15.56 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 3.75 Total: -9.32 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -1.51 Total: -66.99 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.07 Total: -38.49 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -65.33 6.15 -59.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.488 kcal (2) G-P(sol) polarization free energy of solvation -65.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds