Wall clock time and date at job start Sun Mar 29 2020 21:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47312 * 2 1 4 4 C 1.36896 * 119.99520 * 263.82652 * 3 2 1 5 5 H 1.08005 * 119.99354 * 193.64835 * 4 3 2 6 6 C 1.39035 * 120.00377 * 13.64639 * 4 3 2 7 7 N 1.31368 * 119.99595 * 13.54257 * 6 4 3 8 8 Si 1.86794 * 119.99866 * 193.54386 * 6 4 3 9 9 H 1.48501 * 109.47570 * 59.99913 * 8 6 4 10 10 H 1.48498 * 109.47037 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47131 * 299.99786 * 8 6 4 12 12 C 1.34773 * 120.00405 * 83.82383 * 3 2 1 13 13 O 1.21609 * 119.99653 * 4.90475 * 12 3 2 14 14 C 1.47573 * 120.00365 * 184.90581 * 12 3 2 15 15 C 1.39729 * 120.17024 * 42.83140 * 14 12 3 16 16 C 1.37840 * 119.86856 * 179.97438 * 15 14 12 17 17 C 1.38471 * 120.22996 * 0.02562 * 16 15 14 18 18 C 1.38227 * 120.34754 * 0.02562 * 17 16 15 19 19 C 1.38297 * 120.12288 * 359.97438 * 18 17 16 20 20 F 1.35100 * 120.11210 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47580 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47333 * 300.00010 * 1 2 3 23 23 H 1.09000 * 109.47352 * 59.99928 * 1 2 3 24 24 H 1.09002 * 109.47241 * 239.99564 * 2 1 3 25 25 H 1.09000 * 109.47352 * 120.00072 * 2 1 3 26 26 H 0.97007 * 119.99964 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.06303 * 0.24748 * 15 14 12 28 28 H 1.08000 * 119.88649 * 179.97438 * 16 15 14 29 29 H 1.07988 * 119.83087 * 179.97438 * 17 16 15 30 30 H 1.08001 * 119.94193 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3667 1.9840 -1.1787 5 1 2.9273 2.9070 -1.1681 6 6 1.9988 1.4079 -2.3895 7 7 1.1033 0.4470 -2.4144 8 14 2.7779 2.0002 -3.9805 9 1 4.2475 1.7962 -3.9180 10 1 2.2191 1.2314 -5.1215 11 1 2.4861 3.4442 -4.1670 12 6 2.1246 2.0585 1.1603 13 8 1.9008 1.4962 2.2152 14 6 2.5125 3.4823 1.1509 15 6 1.9601 4.3544 0.2093 16 6 2.3265 5.6832 0.2064 17 6 3.2402 6.1564 1.1330 18 6 3.7932 5.3016 2.0679 19 6 3.4360 3.9657 2.0839 20 9 3.9762 3.1305 2.9981 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.8469 0.0448 -3.2591 27 1 1.2442 3.9889 -0.5120 28 1 1.9000 6.3575 -0.5215 29 1 3.5230 7.1986 1.1246 30 1 4.5056 5.6776 2.7873 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:24 Heat of formation + Delta-G solvation = -39.911850 kcal Electronic energy + Delta-G solvation = -16990.689334 eV Core-core repulsion = 14087.181358 eV Total energy + Delta-G solvation = -2903.507976 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.25199 -39.18716 -37.52471 -35.06459 -31.64959 -31.21228 -29.98508 -29.18599 -25.02298 -23.52864 -22.33644 -21.35615 -19.32283 -17.85030 -16.68590 -16.22774 -15.70410 -15.03423 -14.86301 -14.32220 -14.25046 -13.56806 -13.45823 -12.84871 -12.51284 -12.45707 -12.04098 -11.66048 -11.56834 -11.24006 -11.10636 -10.78575 -10.77718 -10.52832 -10.28710 -9.82132 -8.98725 -8.64101 -8.39276 -8.20974 -7.82343 -6.42379 -3.98619 1.43579 1.66078 3.05329 3.14170 3.15905 3.68714 3.97936 4.23551 4.61831 4.81510 4.98737 5.17006 5.34780 5.54580 5.80568 5.84630 6.29022 6.46711 6.48500 6.61686 6.74173 6.80431 6.83745 6.86138 7.02972 7.22774 7.32498 7.41296 7.67835 7.75677 8.37001 8.96023 9.41975 9.83810 10.51492 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.010879 C = 0.008233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.116993 B = 2573.195534 C = 3400.307492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.132 3.868 3 N -0.424 5.424 4 C -0.333 4.333 5 H 0.103 0.897 6 C 0.034 3.966 7 N -0.858 5.858 8 Si 0.923 3.077 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.271 1.271 12 C 0.483 3.517 13 O -0.599 6.599 14 C -0.119 4.119 15 C -0.046 4.046 16 C -0.148 4.148 17 C -0.093 4.093 18 C -0.172 4.172 19 C 0.128 3.872 20 F -0.131 7.131 21 H 0.035 0.965 22 H 0.024 0.976 23 H 0.086 0.914 24 H 0.103 0.897 25 H 0.036 0.964 26 H 0.270 0.730 27 H 0.149 0.851 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 7.762 0.037 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 N -0.140 5.140 4 C -0.460 4.460 5 H 0.120 0.880 6 C -0.170 4.170 7 N -0.496 5.496 8 Si 0.749 3.251 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.196 1.196 12 C 0.271 3.729 13 O -0.486 6.486 14 C -0.123 4.123 15 C -0.065 4.065 16 C -0.166 4.166 17 C -0.111 4.111 18 C -0.191 4.191 19 C 0.107 3.893 20 F -0.109 7.109 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.105 0.895 24 H 0.121 0.879 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.166 0.834 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.965 7.251 0.389 7.523 hybrid contribution 0.477 0.139 -0.773 0.919 sum 2.443 7.390 -0.384 7.793 Atomic orbital electron populations 1.21989 0.96651 0.99622 1.01455 1.21317 0.94480 0.82592 1.00642 1.43720 1.53614 1.11516 1.05121 1.19866 1.33720 1.09656 0.82798 0.87952 1.25289 0.95537 0.96701 0.99509 1.70081 1.27444 1.25067 1.27057 0.86052 0.79582 0.78932 0.80560 1.19810 1.20727 1.19615 1.17733 0.85060 0.85515 0.84579 1.90656 1.57605 1.69406 1.30938 1.20267 0.98714 0.96627 0.96665 1.21538 0.97562 0.91974 0.95446 1.21119 0.99724 0.95747 1.00041 1.20958 0.96530 0.99122 0.94507 1.20941 1.03983 0.91764 1.02375 1.17791 0.94818 0.87843 0.88855 1.91501 1.83911 1.71405 1.64089 0.94621 0.95674 0.89520 0.87880 0.94562 0.91896 0.83376 0.85606 0.85661 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.64 37.15 0.36 -2.88 16 2 C 0.13 3.29 5.28 -4.04 -0.02 3.27 16 3 N -0.42 -10.88 2.63 -115.98 -0.31 -11.19 16 4 C -0.33 -8.17 7.72 -15.00 -0.12 -8.29 16 5 H 0.10 2.42 5.57 -52.48 -0.29 2.12 16 6 C 0.03 0.82 5.12 -17.45 -0.09 0.73 16 7 N -0.86 -20.83 8.08 55.50 0.45 -20.38 16 8 Si 0.92 18.60 29.57 -169.99 -5.03 13.57 16 9 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 12 C 0.48 12.52 7.03 -12.45 -0.09 12.44 16 13 O -0.60 -17.14 16.05 5.27 0.08 -17.06 16 14 C -0.12 -2.63 5.09 -104.91 -0.53 -3.16 16 15 C -0.05 -0.88 7.56 -39.17 -0.30 -1.18 16 16 C -0.15 -2.25 10.03 -39.64 -0.40 -2.65 16 17 C -0.09 -1.29 10.04 -39.50 -0.40 -1.69 16 18 C -0.17 -2.73 10.01 -39.56 -0.40 -3.12 16 19 C 0.13 2.60 7.25 -38.94 -0.28 2.31 16 20 F -0.13 -2.88 16.33 2.25 0.04 -2.84 16 21 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 23 H 0.09 2.12 6.26 -51.93 -0.33 1.80 16 24 H 0.10 2.61 5.83 -51.93 -0.30 2.31 16 25 H 0.04 0.91 7.55 -51.93 -0.39 0.52 16 26 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 27 H 0.15 2.93 6.82 -52.49 -0.36 2.57 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 259.54 15.07 3.91 3.91 Total: -1.00 -28.63 259.54 -6.03 -34.66 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -2.92 Total: 3.56 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.26 Total: -4.23 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.14 Total: -31.57 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.08 Total: -17.06 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.63 -6.03 -34.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.252 kcal (2) G-P(sol) polarization free energy of solvation -28.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds