Wall clock time and date at job start Sun Mar 29 2020 21:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47312 * 2 1 4 4 C 1.36896 * 119.99520 * 263.82652 * 3 2 1 5 5 H 1.08005 * 119.99354 * 193.64835 * 4 3 2 6 6 C 1.39035 * 120.00377 * 13.64639 * 4 3 2 7 7 N 1.31368 * 119.99595 * 13.54257 * 6 4 3 8 8 Si 1.86794 * 119.99866 * 193.54386 * 6 4 3 9 9 H 1.48501 * 109.47570 * 59.99913 * 8 6 4 10 10 H 1.48498 * 109.47037 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47131 * 299.99786 * 8 6 4 12 12 C 1.34773 * 120.00405 * 83.82383 * 3 2 1 13 13 O 1.21609 * 119.99653 * 4.90475 * 12 3 2 14 14 C 1.47573 * 120.00365 * 184.90581 * 12 3 2 15 15 C 1.39729 * 120.17024 * 42.83140 * 14 12 3 16 16 C 1.37840 * 119.86856 * 179.97438 * 15 14 12 17 17 C 1.38471 * 120.22996 * 0.02562 * 16 15 14 18 18 C 1.38227 * 120.34754 * 0.02562 * 17 16 15 19 19 C 1.38297 * 120.12288 * 359.97438 * 18 17 16 20 20 F 1.35100 * 120.11210 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47580 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47333 * 300.00010 * 1 2 3 23 23 H 1.09000 * 109.47352 * 59.99928 * 1 2 3 24 24 H 1.09002 * 109.47241 * 239.99564 * 2 1 3 25 25 H 1.09000 * 109.47352 * 120.00072 * 2 1 3 26 26 H 0.97007 * 119.99964 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.06303 * 0.24748 * 15 14 12 28 28 H 1.08000 * 119.88649 * 179.97438 * 16 15 14 29 29 H 1.07988 * 119.83087 * 179.97438 * 17 16 15 30 30 H 1.08001 * 119.94193 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3667 1.9840 -1.1787 5 1 2.9273 2.9070 -1.1681 6 6 1.9988 1.4079 -2.3895 7 7 1.1033 0.4470 -2.4144 8 14 2.7779 2.0002 -3.9805 9 1 4.2475 1.7962 -3.9180 10 1 2.2191 1.2314 -5.1215 11 1 2.4861 3.4442 -4.1670 12 6 2.1246 2.0585 1.1603 13 8 1.9008 1.4962 2.2152 14 6 2.5125 3.4823 1.1509 15 6 1.9601 4.3544 0.2093 16 6 2.3265 5.6832 0.2064 17 6 3.2402 6.1564 1.1330 18 6 3.7932 5.3016 2.0679 19 6 3.4360 3.9657 2.0839 20 9 3.9762 3.1305 2.9981 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.8469 0.0448 -3.2591 27 1 1.2442 3.9889 -0.5120 28 1 1.9000 6.3575 -0.5215 29 1 3.5230 7.1986 1.1246 30 1 4.5056 5.6776 2.7873 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:23 Heat of formation + Delta-G solvation = -56.358523 kcal Electronic energy + Delta-G solvation = -16991.402515 eV Core-core repulsion = 14087.181358 eV Total energy + Delta-G solvation = -2904.221157 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.83000 -40.92312 -39.07305 -37.03845 -33.53241 -32.84402 -31.35389 -30.92434 -26.90627 -25.20235 -23.80624 -22.99059 -21.17776 -19.55568 -18.15951 -18.06431 -17.24097 -16.66157 -16.45044 -16.17263 -15.77403 -15.30432 -15.00771 -14.61231 -14.36254 -13.98705 -13.77323 -13.27175 -13.07959 -12.84981 -12.74515 -12.63788 -12.31421 -12.13549 -11.99731 -11.74513 -10.90811 -10.51141 -9.84546 -9.81667 -9.59534 -8.26404 -5.90607 0.02336 0.32537 1.45282 1.50392 1.59226 1.99108 2.27626 2.71525 2.90395 3.15781 3.36990 3.91128 4.05970 4.20345 4.42199 4.48134 4.53177 4.78049 4.87873 4.95928 5.07693 5.17221 5.24726 5.34137 5.41540 5.45358 5.51753 5.74885 5.78538 6.00666 6.46240 7.06671 7.48554 7.91403 8.68589 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.010879 C = 0.008233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.116993 B = 2573.195534 C = 3400.307492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.131 3.869 3 N -0.431 5.431 4 C -0.354 4.354 5 H 0.110 0.890 6 C -0.001 4.001 7 N -0.878 5.878 8 Si 0.991 3.009 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.256 1.256 12 C 0.463 3.537 13 O -0.645 6.645 14 C -0.157 4.157 15 C -0.058 4.058 16 C -0.133 4.133 17 C -0.067 4.067 18 C -0.159 4.159 19 C 0.094 3.906 20 F -0.152 7.152 21 H 0.058 0.942 22 H 0.009 0.991 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.021 0.979 26 H 0.274 0.726 27 H 0.132 0.868 28 H 0.166 0.834 29 H 0.181 0.819 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 10.965 -1.478 11.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.008 3.992 3 N -0.146 5.146 4 C -0.480 4.480 5 H 0.128 0.872 6 C -0.204 4.204 7 N -0.516 5.516 8 Si 0.814 3.186 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.180 1.180 12 C 0.254 3.746 13 O -0.536 6.536 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.150 4.150 17 C -0.085 4.085 18 C -0.177 4.177 19 C 0.074 3.926 20 F -0.131 7.131 21 H 0.077 0.923 22 H 0.028 0.972 23 H 0.095 0.905 24 H 0.117 0.883 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.184 0.816 29 H 0.199 0.801 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.771 10.465 -1.139 10.886 hybrid contribution 0.212 -0.803 -0.312 0.887 sum 2.983 9.662 -1.451 10.216 Atomic orbital electron populations 1.21814 0.95472 1.00710 1.00037 1.21301 0.95448 0.82909 0.99503 1.43953 1.53301 1.11553 1.05820 1.20156 1.34671 1.10498 0.82720 0.87246 1.26128 0.95473 0.96625 1.02153 1.70157 1.27814 1.25563 1.28024 0.85011 0.78150 0.79165 0.76282 1.20073 1.20545 1.18022 1.18467 0.84861 0.87374 0.83926 1.90583 1.59729 1.70976 1.32291 1.20133 1.01597 0.94768 0.99617 1.21470 0.97801 0.93630 0.94831 1.21572 0.98825 0.94143 1.00504 1.21596 0.93889 1.01167 0.91881 1.21383 1.03720 0.89565 1.03069 1.18279 0.95848 0.89591 0.88907 1.91436 1.84311 1.72498 1.64861 0.92314 0.97171 0.90489 0.88340 0.96050 0.91550 0.85064 0.81606 0.80123 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 9.64 71.98 0.69 -5.21 16 2 C 0.13 6.84 5.28 86.38 0.46 7.29 16 3 N -0.43 -23.14 2.63 -639.10 -1.68 -24.82 16 4 C -0.35 -17.67 7.72 84.09 0.65 -17.02 16 5 H 0.11 5.20 5.57 -2.91 -0.02 5.18 16 6 C 0.00 -0.05 5.12 84.95 0.44 0.39 16 7 N -0.88 -42.83 8.08 21.68 0.18 -42.65 16 8 Si 0.99 37.21 29.57 68.60 2.03 39.23 16 9 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 10 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 11 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 12 C 0.46 25.35 7.03 86.71 0.61 25.96 16 13 O -0.64 -39.37 16.05 -4.06 -0.07 -39.43 16 14 C -0.16 -7.13 5.09 -20.05 -0.10 -7.23 16 15 C -0.06 -2.18 7.56 22.54 0.17 -2.00 16 16 C -0.13 -3.46 10.03 22.23 0.22 -3.24 16 17 C -0.07 -1.50 10.04 22.32 0.22 -1.27 16 18 C -0.16 -4.50 10.01 22.28 0.22 -4.27 16 19 C 0.09 3.83 7.25 22.68 0.16 3.99 16 20 F -0.15 -6.96 16.33 44.97 0.73 -6.23 16 21 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 22 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 23 H 0.08 3.86 6.26 -2.39 -0.01 3.85 16 24 H 0.10 5.18 5.83 -2.39 -0.01 5.17 16 25 H 0.02 1.14 7.55 -2.39 -0.02 1.12 16 26 H 0.27 12.59 8.31 -92.70 -0.77 11.82 16 27 H 0.13 5.24 6.82 -2.91 -0.02 5.22 16 28 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.18 2.18 8.06 -2.92 -0.02 2.15 16 30 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -66.37 259.54 6.09 -60.27 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.16 Total: 16.24 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 3.75 Total: -2.61 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -1.51 Total: -67.47 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.07 Total: -39.43 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.73 Total: -6.23 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.23 kcal Total: -66.37 6.09 -60.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.915 kcal (2) G-P(sol) polarization free energy of solvation -66.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds