Wall clock time and date at job start Sun Mar 29 2020 21:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46494 * 119.99607 * 2 1 4 4 C 1.50698 * 109.47487 * 269.99784 * 3 2 1 5 5 C 1.38219 * 120.00966 * 104.99793 * 4 3 2 6 6 C 1.38227 * 120.02402 * 179.72409 * 5 4 3 7 7 C 1.38263 * 120.05156 * 0.30685 * 6 5 4 8 8 C 1.38177 * 120.02526 * 359.97438 * 7 6 5 9 9 C 1.38439 * 120.01637 * 285.30499 * 4 3 2 10 10 F 1.35105 * 120.02463 * 359.97438 * 9 4 3 11 11 C 1.34777 * 119.99878 * 180.02562 * 2 1 3 12 12 O 1.21687 * 119.99615 * 179.97438 * 11 2 1 13 13 C 1.46369 * 120.00435 * 0.02562 * 11 2 1 14 14 H 1.08004 * 119.99821 * 359.97438 * 13 11 2 15 15 C 1.40043 * 120.00642 * 179.97438 * 13 11 2 16 16 N 1.30677 * 119.99884 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00530 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46955 * 60.00094 * 17 15 13 19 19 H 1.48503 * 109.47082 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47078 * 300.00006 * 17 15 13 21 21 H 1.09001 * 109.47265 * 89.99962 * 1 2 3 22 22 H 1.09002 * 109.46636 * 209.99688 * 1 2 3 23 23 H 1.08993 * 109.47380 * 329.99779 * 1 2 3 24 24 H 1.09012 * 109.46843 * 150.00240 * 3 2 1 25 25 H 1.08992 * 109.47572 * 30.00406 * 3 2 1 26 26 H 1.08002 * 119.99072 * 0.02562 * 5 4 3 27 27 H 1.07999 * 119.97012 * 180.27779 * 6 5 4 28 28 H 1.08004 * 119.99046 * 179.97438 * 7 6 5 29 29 H 1.08000 * 120.01271 * 180.02562 * 8 7 6 30 30 H 0.96995 * 120.00605 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.7086 2.7343 -1.9693 6 6 1.9427 3.1374 -3.2706 7 6 2.9128 2.5063 -4.0271 8 6 3.6499 1.4721 -3.4827 9 6 3.4163 1.0674 -2.1791 10 9 4.1364 0.0562 -1.6458 11 6 2.1389 -1.1672 -0.0005 12 8 3.3558 -1.1672 -0.0010 13 6 1.4071 -2.4349 -0.0017 14 1 0.3271 -2.4349 -0.0017 15 6 2.1073 -3.6477 -0.0027 16 7 3.4140 -3.6477 -0.0032 17 14 1.1733 -5.2654 -0.0035 18 1 0.3191 -5.3433 -1.2157 19 1 2.1384 -6.3941 -0.0052 20 1 0.3201 -5.3449 1.2093 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 3.1499 1.1384 0.5139 25 1 1.6084 2.0283 0.5138 26 1 0.9505 3.2280 -1.3794 27 1 1.3670 3.9457 -3.6968 28 1 3.0946 2.8219 -5.0439 29 1 4.4079 0.9795 -4.0736 30 1 3.8991 -4.4877 -0.0036 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048874291.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:33 Heat of formation + Delta-G solvation = -49.344913 kcal Electronic energy + Delta-G solvation = -16899.269918 eV Core-core repulsion = 13995.352894 eV Total energy + Delta-G solvation = -2903.917024 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.79583 -38.77083 -37.31731 -33.99261 -32.36747 -31.31565 -30.04838 -27.11124 -25.82667 -24.28590 -22.29886 -21.25032 -19.12548 -16.85917 -16.46354 -15.78584 -15.45827 -15.38426 -14.83624 -14.12032 -14.00237 -13.88285 -13.56509 -12.62668 -12.40254 -12.27687 -11.84312 -11.53677 -11.48713 -11.37020 -11.16563 -10.99279 -10.75826 -10.42394 -10.22279 -10.08709 -8.79015 -8.66541 -8.15216 -7.44383 -7.19066 -6.12576 -4.58287 1.55583 1.62257 3.17795 3.22688 3.24269 3.92286 4.15597 4.61523 4.76190 4.90122 5.09189 5.17876 5.33339 5.49502 5.71094 5.81065 5.90752 6.01596 6.16618 6.38616 6.44610 6.55110 6.56956 6.61512 6.68833 6.77413 7.37691 7.49198 7.64863 8.17578 8.38085 9.07629 9.47170 10.64542 10.83899 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.034123 B = 0.007931 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.355960 B = 3529.394332 C = 3825.773298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.645 5.645 3 C 0.164 3.836 4 C -0.133 4.133 5 C -0.087 4.087 6 C -0.149 4.149 7 C -0.099 4.099 8 C -0.171 4.171 9 C 0.128 3.872 10 F -0.093 7.093 11 C 0.551 3.449 12 O -0.554 6.554 13 C -0.544 4.544 14 H 0.070 0.930 15 C 0.088 3.912 16 N -0.765 5.765 17 Si 0.904 3.096 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.268 1.268 21 H 0.028 0.972 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 10.412 -4.544 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.383 5.383 3 C 0.039 3.961 4 C -0.136 4.136 5 C -0.106 4.106 6 C -0.167 4.167 7 C -0.118 4.118 8 C -0.190 4.190 9 C 0.108 3.892 10 F -0.071 7.071 11 C 0.356 3.644 12 O -0.435 6.435 13 C -0.581 4.581 14 H 0.088 0.912 15 C -0.132 4.132 16 N -0.394 5.394 17 Si 0.729 3.271 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.193 1.193 21 H 0.047 0.953 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.459 10.225 -4.487 11.689 hybrid contribution -0.542 -0.947 -0.128 1.099 sum -4.002 9.278 -4.615 11.108 Atomic orbital electron populations 1.21386 0.82198 1.00980 0.99498 1.48138 1.05097 1.04783 1.80299 1.19878 0.98726 0.87288 0.90166 1.20753 0.96423 0.97025 0.99409 1.20879 0.98359 0.96151 0.95218 1.21014 0.99610 1.01308 0.94750 1.20864 0.95819 0.95587 0.99481 1.21196 1.03012 1.00132 0.94680 1.17870 0.92223 0.87254 0.91891 1.91856 1.74753 1.55058 1.85417 1.18298 0.87264 0.82110 0.76737 1.90646 1.13486 1.85768 1.53592 1.20951 0.93542 0.89291 1.54300 0.91240 1.25705 0.94595 1.00133 0.92746 1.70014 1.06939 1.27211 1.35250 0.86492 0.79880 0.81348 0.79375 1.19377 1.20588 1.19315 0.95311 0.90931 0.94149 0.89841 0.91626 0.85835 0.86175 0.85934 0.85416 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.96 10.19 59.85 0.61 2.57 16 2 N -0.64 -14.96 2.86 -184.64 -0.53 -15.49 16 3 C 0.16 3.29 5.45 -5.20 -0.03 3.26 16 4 C -0.13 -2.52 5.47 -104.56 -0.57 -3.09 16 5 C -0.09 -1.31 9.67 -39.59 -0.38 -1.69 16 6 C -0.15 -1.98 10.04 -39.58 -0.40 -2.38 16 7 C -0.10 -1.38 10.04 -39.59 -0.40 -1.78 16 8 C -0.17 -2.93 10.03 -39.52 -0.40 -3.32 16 9 C 0.13 2.67 7.19 -39.42 -0.28 2.39 16 10 F -0.09 -2.41 13.02 2.25 0.03 -2.38 16 11 C 0.55 15.80 7.35 -12.99 -0.10 15.70 16 12 O -0.55 -17.66 11.15 5.20 0.06 -17.60 16 13 C -0.54 -15.52 8.74 -35.64 -0.31 -15.84 16 14 H 0.07 1.82 6.00 -52.48 -0.31 1.50 16 15 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 16 N -0.77 -23.19 11.83 55.55 0.66 -22.53 16 17 Si 0.90 20.44 29.56 -169.99 -5.02 15.41 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 1.41 6.09 -51.93 -0.32 1.09 16 23 H 0.04 0.61 7.89 -51.93 -0.41 0.20 16 24 H 0.08 1.87 7.37 -51.92 -0.38 1.49 16 25 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 26 H 0.12 1.51 8.00 -52.49 -0.42 1.09 16 27 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 29 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 30 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 LS Contribution 263.07 15.07 3.96 3.96 Total: -1.00 -34.51 263.07 -6.26 -40.77 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.07 Total: -0.35 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.35 Total: -1.80 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.13 Total: -38.02 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.06 Total: -17.60 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.03 Total: -2.38 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -34.51 -6.26 -40.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048874291.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.573 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds