Wall clock time and date at job start Sun Mar 29 2020 21:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47484 * 2 1 4 4 C 1.34781 * 120.00259 * 269.99867 * 3 2 1 5 5 O 1.21753 * 120.00184 * 185.62726 * 4 3 2 6 6 C 1.46129 * 119.99482 * 5.63255 * 4 3 2 7 7 H 1.07994 * 119.99998 * 5.23132 * 6 4 3 8 8 C 1.40132 * 119.99885 * 185.23705 * 6 4 3 9 9 N 1.30634 * 119.99711 * 354.90674 * 8 6 4 10 10 Si 1.86792 * 119.99997 * 174.90464 * 8 6 4 11 11 H 1.48500 * 109.47404 * 95.00047 * 10 8 6 12 12 H 1.48510 * 109.47164 * 214.99993 * 10 8 6 13 13 H 1.48502 * 109.47433 * 334.99520 * 10 8 6 14 14 C 1.39565 * 120.00205 * 89.99720 * 3 2 1 15 15 C 1.39043 * 120.05915 * 236.09027 * 14 3 2 16 16 C 1.38039 * 119.93995 * 179.72127 * 15 14 3 17 17 C 1.38550 * 120.05766 * 0.55294 * 16 15 14 18 18 F 1.35103 * 119.94254 * 179.70542 * 17 16 15 19 19 C 1.38548 * 120.11785 * 359.71660 * 17 16 15 20 20 C 1.38036 * 120.06289 * 0.02562 * 19 17 16 21 21 H 1.09000 * 109.46928 * 59.99927 * 1 2 3 22 22 H 1.08999 * 109.47471 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46973 * 300.00157 * 1 2 3 24 24 H 1.09000 * 109.46928 * 120.00073 * 2 1 3 25 25 H 1.09001 * 109.47471 * 239.99849 * 2 1 3 26 26 H 0.97006 * 119.99925 * 180.02562 * 9 8 6 27 27 H 1.08000 * 120.02819 * 359.97000 * 15 14 3 28 28 H 1.07999 * 119.97091 * 180.25338 * 16 15 14 29 29 H 1.08004 * 119.97442 * 179.97438 * 19 17 16 30 30 H 1.08000 * 120.03400 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0165 -1.1672 5 8 2.7450 3.1258 -1.1697 6 6 1.8842 1.3740 -2.4296 7 1 1.3626 0.4284 -2.4251 8 6 2.2169 1.9849 -3.6461 9 7 2.7580 3.1738 -3.6534 10 14 1.8866 1.0991 -5.2571 11 1 0.5764 1.5361 -5.8029 12 1 2.9610 1.4234 -6.2298 13 1 1.8599 -0.3666 -5.0198 14 6 2.2510 2.0391 1.2086 15 6 1.6193 3.2485 1.4760 16 6 1.8467 3.8943 2.6747 17 6 2.7123 3.3441 3.6061 18 9 2.9378 3.9812 4.7760 19 6 3.3474 2.1419 3.3398 20 6 3.1195 1.4892 2.1450 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.9880 3.5969 -4.4955 27 1 0.9483 3.6803 0.7482 28 1 1.3531 4.8317 2.8846 29 1 4.0220 1.7153 4.0674 30 1 3.6151 0.5523 1.9378 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050013479.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:15 Heat of formation + Delta-G solvation = -56.805308 kcal Electronic energy + Delta-G solvation = -16494.431511 eV Core-core repulsion = 13590.190980 eV Total energy + Delta-G solvation = -2904.240531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.48441 -39.33176 -36.99484 -34.44395 -32.69190 -30.70693 -30.47240 -28.14075 -26.20589 -23.15301 -22.33287 -21.81266 -19.52986 -17.27482 -16.78612 -16.08919 -15.85126 -15.52467 -15.16578 -14.28612 -14.07145 -13.51852 -13.18114 -13.10366 -12.68181 -12.47463 -12.24285 -11.93222 -11.54952 -11.43325 -11.23349 -11.02684 -10.67189 -10.51597 -10.37298 -10.23486 -9.00948 -8.68142 -8.57288 -7.77898 -7.16647 -6.34817 -4.80085 1.62890 1.70058 3.05689 3.13717 3.16955 3.94356 4.03450 4.27912 4.44314 4.70064 5.16720 5.23129 5.53757 5.58936 5.71923 5.80206 5.90344 5.99399 6.10255 6.26755 6.33711 6.50496 6.52925 6.67147 6.74766 6.96449 7.19563 7.31224 7.53294 8.04172 8.26348 8.86806 9.16372 10.39925 10.58569 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.038921 B = 0.006808 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.229939 B = 4111.980817 C = 4516.434939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.598 5.598 4 C 0.551 3.449 5 O -0.563 6.563 6 C -0.537 4.537 7 H 0.076 0.924 8 C 0.086 3.914 9 N -0.760 5.760 10 Si 0.909 3.091 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.263 1.263 14 C 0.186 3.814 15 C -0.091 4.091 16 C -0.138 4.138 17 C 0.059 3.941 18 F -0.151 7.151 19 C -0.140 4.140 20 C -0.125 4.125 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.271 0.729 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -5.261 8.018 9.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.329 5.329 4 C 0.359 3.641 5 O -0.444 6.444 6 C -0.573 4.573 7 H 0.094 0.906 8 C -0.135 4.135 9 N -0.388 5.388 10 Si 0.733 3.267 11 H -0.197 1.197 12 H -0.203 1.203 13 H -0.187 1.187 14 C 0.091 3.909 15 C -0.111 4.111 16 C -0.157 4.157 17 C 0.039 3.961 18 F -0.130 7.130 19 C -0.159 4.159 20 C -0.146 4.146 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.326 -4.490 7.854 9.341 hybrid contribution -0.108 -0.326 -0.600 0.691 sum -2.434 -4.815 7.254 9.041 Atomic orbital electron populations 1.22192 0.97049 1.00883 1.02497 1.21304 0.93684 0.83255 1.01845 1.46119 1.69139 1.13953 1.03652 1.18381 0.78681 0.85315 0.81729 1.90669 1.47381 1.20694 1.85672 1.20944 1.39632 1.07914 0.88761 0.90554 1.25777 0.93033 0.94190 1.00472 1.70000 1.29269 1.12082 1.27496 0.86334 0.78629 0.80493 0.81264 1.19698 1.20303 1.18670 1.17859 0.92850 0.92904 0.87273 1.21147 0.99019 0.95687 0.95276 1.20934 0.99850 1.00951 0.93976 1.17591 1.01700 0.93646 0.83180 1.91428 1.93889 1.81693 1.46008 1.20817 1.01764 0.94840 0.98496 1.21032 0.97840 1.01603 0.94079 0.91390 0.92766 0.93448 0.92667 0.89634 0.91832 0.85145 0.85316 0.85393 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.13 37.16 0.38 -2.27 16 2 C 0.12 2.15 5.62 -4.05 -0.02 2.13 16 3 N -0.60 -13.16 2.57 -115.09 -0.30 -13.45 16 4 C 0.55 15.00 7.36 -13.09 -0.10 14.90 16 5 O -0.56 -17.62 14.37 5.14 0.07 -17.55 16 6 C -0.54 -14.21 8.44 -35.71 -0.30 -14.51 16 7 H 0.08 1.83 5.91 -52.49 -0.31 1.52 16 8 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 9 N -0.76 -21.93 11.84 55.55 0.66 -21.27 16 10 Si 0.91 19.16 29.56 -169.99 -5.03 14.14 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 14 C 0.19 3.80 5.18 -83.74 -0.43 3.37 16 15 C -0.09 -1.81 8.92 -39.36 -0.35 -2.16 16 16 C -0.14 -2.39 10.02 -39.54 -0.40 -2.78 16 17 C 0.06 0.98 7.30 -39.35 -0.29 0.70 16 18 F -0.15 -2.45 17.27 2.25 0.04 -2.41 16 19 C -0.14 -2.22 10.02 -39.54 -0.40 -2.62 16 20 C -0.12 -2.18 9.31 -39.35 -0.37 -2.54 16 21 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.82 7.31 -51.93 -0.38 0.44 16 25 H 0.09 1.54 6.44 -51.93 -0.33 1.20 16 26 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 27 H 0.13 2.77 8.03 -52.49 -0.42 2.34 16 28 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 29 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.13 1.97 7.80 -52.49 -0.41 1.56 16 LS Contribution 268.61 15.07 4.05 4.05 Total: -1.00 -31.72 268.61 -5.95 -37.68 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.08 Total: 2.41 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.37 Total: -3.60 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.36 Total: -34.72 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.07 Total: -17.55 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.72 -5.95 -37.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050013479.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.129 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds