Wall clock time and date at job start Sun Mar 29 2020 21:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47484 * 2 1 4 4 C 1.34781 * 120.00259 * 269.99867 * 3 2 1 5 5 O 1.21753 * 120.00184 * 185.62726 * 4 3 2 6 6 C 1.46129 * 119.99482 * 5.63255 * 4 3 2 7 7 H 1.07994 * 119.99998 * 5.23132 * 6 4 3 8 8 C 1.40132 * 119.99885 * 185.23705 * 6 4 3 9 9 N 1.30634 * 119.99711 * 354.90674 * 8 6 4 10 10 Si 1.86792 * 119.99997 * 174.90464 * 8 6 4 11 11 H 1.48500 * 109.47404 * 95.00047 * 10 8 6 12 12 H 1.48510 * 109.47164 * 214.99993 * 10 8 6 13 13 H 1.48502 * 109.47433 * 334.99520 * 10 8 6 14 14 C 1.39565 * 120.00205 * 89.99720 * 3 2 1 15 15 C 1.39043 * 120.05915 * 236.09027 * 14 3 2 16 16 C 1.38039 * 119.93995 * 179.72127 * 15 14 3 17 17 C 1.38550 * 120.05766 * 0.55294 * 16 15 14 18 18 F 1.35103 * 119.94254 * 179.70542 * 17 16 15 19 19 C 1.38548 * 120.11785 * 359.71660 * 17 16 15 20 20 C 1.38036 * 120.06289 * 0.02562 * 19 17 16 21 21 H 1.09000 * 109.46928 * 59.99927 * 1 2 3 22 22 H 1.08999 * 109.47471 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46973 * 300.00157 * 1 2 3 24 24 H 1.09000 * 109.46928 * 120.00073 * 2 1 3 25 25 H 1.09001 * 109.47471 * 239.99849 * 2 1 3 26 26 H 0.97006 * 119.99925 * 180.02562 * 9 8 6 27 27 H 1.08000 * 120.02819 * 359.97000 * 15 14 3 28 28 H 1.07999 * 119.97091 * 180.25338 * 16 15 14 29 29 H 1.08004 * 119.97442 * 179.97438 * 19 17 16 30 30 H 1.08000 * 120.03400 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0165 -1.1672 5 8 2.7450 3.1258 -1.1697 6 6 1.8842 1.3740 -2.4296 7 1 1.3626 0.4284 -2.4251 8 6 2.2169 1.9849 -3.6461 9 7 2.7580 3.1738 -3.6534 10 14 1.8866 1.0991 -5.2571 11 1 0.5764 1.5361 -5.8029 12 1 2.9610 1.4234 -6.2298 13 1 1.8599 -0.3666 -5.0198 14 6 2.2510 2.0391 1.2086 15 6 1.6193 3.2485 1.4760 16 6 1.8467 3.8943 2.6747 17 6 2.7123 3.3441 3.6061 18 9 2.9378 3.9812 4.7760 19 6 3.3474 2.1419 3.3398 20 6 3.1195 1.4892 2.1450 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.9880 3.5969 -4.4955 27 1 0.9483 3.6803 0.7482 28 1 1.3531 4.8317 2.8846 29 1 4.0220 1.7153 4.0674 30 1 3.6151 0.5523 1.9378 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050013479.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:15 Heat of formation + Delta-G solvation = -76.055786 kcal Electronic energy + Delta-G solvation = -16495.266274 eV Core-core repulsion = 13590.190980 eV Total energy + Delta-G solvation = -2905.075295 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.81560 -40.93372 -38.69605 -36.22223 -34.71196 -32.11360 -31.90731 -29.78889 -28.09691 -24.59462 -23.87387 -23.32151 -21.21413 -18.70662 -18.56466 -17.88870 -17.34469 -17.18529 -16.51048 -16.01464 -15.48323 -15.08931 -14.75214 -14.50526 -14.36421 -13.96606 -13.78759 -13.38040 -13.19274 -13.05435 -12.88849 -12.72309 -12.22114 -12.03631 -11.98273 -11.81223 -10.95821 -10.17827 -10.06625 -9.85160 -8.80484 -8.33439 -6.87658 0.19282 0.30354 1.40486 1.41355 1.57556 2.21242 2.37854 2.66391 2.67961 3.32381 3.56226 3.84170 3.94938 4.22719 4.32459 4.41829 4.57836 4.62169 4.73312 4.95021 4.98687 5.12056 5.15057 5.21626 5.30227 5.39818 5.53024 5.77052 5.83376 6.13620 6.53865 6.83827 7.28301 8.40858 8.62176 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.038921 B = 0.006808 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.229939 B = 4111.980817 C = 4516.434939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 N -0.599 5.599 4 C 0.538 3.462 5 O -0.619 6.619 6 C -0.557 4.557 7 H 0.098 0.902 8 C 0.029 3.971 9 N -0.817 5.817 10 Si 0.994 3.006 11 H -0.264 1.264 12 H -0.275 1.275 13 H -0.243 1.243 14 C 0.153 3.847 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.061 3.939 18 F -0.144 7.144 19 C -0.125 4.125 20 C -0.120 4.120 21 H 0.040 0.960 22 H 0.090 0.910 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.275 0.725 27 H 0.102 0.898 28 H 0.147 0.853 29 H 0.167 0.833 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 -7.500 8.919 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.006 4.006 3 N -0.328 5.328 4 C 0.346 3.654 5 O -0.505 6.505 6 C -0.592 4.592 7 H 0.116 0.884 8 C -0.187 4.187 9 N -0.446 5.446 10 Si 0.813 3.187 11 H -0.189 1.189 12 H -0.200 1.200 13 H -0.166 1.166 14 C 0.059 3.941 15 C -0.134 4.134 16 C -0.156 4.156 17 C 0.041 3.959 18 F -0.123 7.123 19 C -0.145 4.145 20 C -0.140 4.140 21 H 0.059 0.941 22 H 0.109 0.891 23 H 0.065 0.935 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.165 0.835 29 H 0.184 0.816 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.354 -6.775 8.814 11.364 hybrid contribution -0.108 0.396 -0.708 0.818 sum -2.462 -6.379 8.106 10.605 Atomic orbital electron populations 1.22104 0.95718 1.02778 1.01133 1.21584 0.94811 0.81094 1.03159 1.45840 1.68687 1.15290 1.03019 1.18726 0.78189 0.84850 0.83621 1.90611 1.49800 1.23010 1.87073 1.21448 1.39842 1.08762 0.89175 0.88419 1.27018 0.92015 0.94703 1.04933 1.70178 1.31144 1.14429 1.28891 0.85049 0.78521 0.79800 0.75285 1.18881 1.20032 1.16603 1.18177 0.94723 0.93633 0.87558 1.21031 0.99957 0.96428 0.96011 1.21063 0.99954 1.01461 0.93121 1.17678 1.01201 0.93925 0.83077 1.91453 1.93748 1.81633 1.45462 1.21183 1.01048 0.93879 0.98341 1.21224 0.96800 1.02329 0.93666 0.94058 0.89131 0.93496 0.89328 0.90199 0.91519 0.88006 0.83488 0.81557 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 10.13 71.98 0.73 -4.07 16 2 C 0.12 3.89 5.62 86.38 0.49 4.38 16 3 N -0.60 -26.66 2.57 -636.24 -1.64 -28.29 16 4 C 0.54 30.35 7.36 86.29 0.64 30.98 16 5 O -0.62 -40.81 14.37 -4.52 -0.06 -40.87 16 6 C -0.56 -30.02 8.44 24.78 0.21 -29.81 16 7 H 0.10 4.65 5.91 -2.91 -0.02 4.63 16 8 C 0.03 1.57 5.50 85.33 0.47 2.04 16 9 N -0.82 -48.95 11.84 21.85 0.26 -48.69 16 10 Si 0.99 39.33 29.56 68.60 2.03 41.36 16 11 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 12 H -0.28 -10.67 7.11 99.48 0.71 -9.97 16 13 H -0.24 -8.76 7.11 99.48 0.71 -8.05 16 14 C 0.15 6.27 5.18 38.30 0.20 6.47 16 15 C -0.11 -4.69 8.92 22.42 0.20 -4.49 16 16 C -0.14 -4.69 10.02 22.30 0.22 -4.47 16 17 C 0.06 1.91 7.30 22.42 0.16 2.07 16 18 F -0.14 -4.27 17.27 44.97 0.78 -3.50 16 19 C -0.13 -3.58 10.02 22.30 0.22 -3.36 16 20 C -0.12 -3.92 9.31 22.42 0.21 -3.72 16 21 H 0.04 1.45 7.69 -2.39 -0.02 1.43 16 22 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.09 2.39 7.31 -2.39 -0.02 2.37 16 25 H 0.08 2.77 6.44 -2.39 -0.02 2.76 16 26 H 0.27 14.95 8.29 -92.70 -0.77 14.18 16 27 H 0.10 4.68 8.03 -2.91 -0.02 4.66 16 28 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 29 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.15 4.16 7.80 -2.91 -0.02 4.14 16 Total: -1.00 -72.20 268.61 6.26 -65.94 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 1.15 Total: 18.02 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 3.75 Total: -3.97 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -1.38 Total: -76.98 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.06 Total: -40.87 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -72.20 6.26 -65.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050013479.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.119 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds