Wall clock time and date at job start Sun Mar 29 2020 21:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47049 * 89.99950 * 8 6 4 10 10 H 1.48499 * 109.47170 * 209.99777 * 8 6 4 11 11 H 1.48502 * 109.47245 * 329.99617 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.34773 * 119.99910 * 275.00232 * 12 2 1 14 14 O 1.21567 * 120.00198 * 359.97438 * 13 12 2 15 15 C 1.47693 * 119.99979 * 179.97438 * 13 12 2 16 16 C 1.39663 * 120.16648 * 359.97438 * 15 13 12 17 17 C 1.37860 * 119.87634 * 179.97438 * 16 15 13 18 18 C 1.38453 * 120.22237 * 0.02562 * 17 16 15 19 19 C 1.38208 * 120.33570 * 359.97124 * 18 17 16 20 20 C 1.38314 * 120.11900 * 359.75153 * 19 18 17 21 21 F 1.35107 * 120.11118 * 180.27603 * 20 19 18 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 26 26 H 0.96995 * 120.00293 * 94.99410 * 12 2 1 27 27 H 1.08000 * 120.05892 * 359.97438 * 16 15 13 28 28 H 1.08001 * 119.88266 * 179.97438 * 17 16 15 29 29 H 1.07994 * 119.83335 * 179.97438 * 18 17 16 30 30 H 1.08006 * 119.93994 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1403 -5.1119 11 1 3.6310 -1.7566 -3.7118 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8583 1.1614 2.4116 15 6 2.6388 -0.7146 3.5632 16 6 2.9709 -2.0699 3.5047 17 6 3.4299 -2.7138 4.6340 18 6 3.5620 -2.0216 5.8258 19 6 3.2359 -0.6803 5.8938 20 6 2.7796 -0.0190 4.7679 21 9 2.4662 1.2936 4.8333 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7083 1.1609 -3.4845 26 1 2.2490 -1.6317 1.1527 27 1 2.8685 -2.6124 2.5765 28 1 3.6864 -3.7620 4.5890 29 1 3.9217 -2.5324 6.7067 30 1 3.3411 -0.1466 6.8269 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336209.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:55 Heat of formation + Delta-G solvation = -60.787841 kcal Electronic energy + Delta-G solvation = -16249.332486 eV Core-core repulsion = 13344.919259 eV Total energy + Delta-G solvation = -2904.413227 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.62694 -39.54303 -37.92176 -34.81528 -32.58892 -31.31183 -30.46097 -28.64209 -25.27221 -23.99022 -22.65021 -21.09817 -19.54800 -18.18605 -17.03654 -16.33911 -15.86142 -15.47847 -15.06912 -14.93645 -14.38250 -14.09581 -13.87796 -13.04053 -12.97786 -12.43392 -12.25300 -12.01071 -11.68731 -11.31603 -11.11537 -10.95678 -10.74786 -10.33477 -10.24466 -9.16063 -9.14747 -9.04664 -8.73587 -8.56629 -7.93075 -6.13021 -4.22753 0.81634 1.13407 3.17229 3.23947 3.30729 3.32875 3.93143 4.01898 4.27820 4.36341 4.65058 4.78546 4.99869 5.19098 5.20247 5.36339 5.68423 5.95269 6.04972 6.12655 6.25799 6.76525 6.83212 6.96417 7.13955 7.42255 7.53907 7.67533 7.90122 8.13526 8.60769 8.75602 9.06065 9.44544 10.93020 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.039297 B = 0.006019 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.349599 B = 4651.177870 C = 5142.882760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.700 5.700 13 C 0.539 3.461 14 O -0.538 6.538 15 C -0.160 4.160 16 C -0.060 4.060 17 C -0.142 4.142 18 C -0.076 4.076 19 C -0.169 4.169 20 C 0.152 3.848 21 F -0.116 7.116 22 H 0.091 0.909 23 H 0.027 0.973 24 H 0.015 0.985 25 H 0.265 0.735 26 H 0.388 0.612 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.501 -8.134 13.710 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.348 5.348 13 C 0.324 3.676 14 O -0.417 6.417 15 C -0.164 4.164 16 C -0.079 4.079 17 C -0.160 4.160 18 C -0.094 4.094 19 C -0.188 4.188 20 C 0.132 3.868 21 F -0.094 7.094 22 H 0.110 0.890 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.221 0.779 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.178 -7.086 13.538 15.841 hybrid contribution 0.346 -0.721 -0.851 1.167 sum 4.524 -7.807 12.687 15.569 Atomic orbital electron populations 1.22083 0.98293 0.99184 1.01025 1.18804 0.91147 0.94094 0.79713 0.93170 1.21194 1.32593 1.13272 0.90262 0.92043 1.24893 0.94798 0.94933 0.99073 1.69904 1.35772 1.22379 1.23934 0.86428 0.79144 0.79255 0.82146 1.20524 1.21041 1.19851 1.46464 1.64620 1.13475 1.10252 1.18007 0.79469 0.86894 0.83243 1.90794 1.50814 1.15242 1.84881 1.20522 1.06006 0.95282 0.94638 1.21337 0.94869 0.92449 0.99269 1.21134 1.01597 1.00620 0.92635 1.21120 0.96930 0.93194 0.98205 1.21130 1.03924 0.95896 0.97820 1.17783 0.96864 0.78746 0.93421 1.91594 1.89584 1.31479 1.96725 0.89025 0.95409 0.96571 0.92521 0.77892 0.84436 0.84940 0.84910 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.85 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.99 11.32 55.43 0.63 -24.37 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 12 N -0.70 -15.05 5.02 -55.92 -0.28 -15.34 16 13 C 0.54 11.66 7.73 -12.40 -0.10 11.56 16 14 O -0.54 -13.89 15.00 5.31 0.08 -13.81 16 15 C -0.16 -2.70 5.88 -104.91 -0.62 -3.32 16 16 C -0.06 -0.77 9.54 -39.19 -0.37 -1.15 16 17 C -0.14 -1.41 10.03 -39.64 -0.40 -1.80 16 18 C -0.08 -0.72 10.04 -39.51 -0.40 -1.11 16 19 C -0.17 -1.96 10.01 -39.56 -0.40 -2.36 16 20 C 0.15 2.44 7.29 -38.96 -0.28 2.16 16 21 F -0.12 -2.17 15.55 2.25 0.04 -2.13 16 22 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.39 7.02 6.57 -40.82 -0.27 6.76 16 27 H 0.14 1.54 6.41 -52.49 -0.34 1.20 16 28 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 267.24 15.07 4.03 4.03 Total: -1.00 -31.96 267.24 -6.29 -38.25 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -2.97 Total: 3.37 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.79 Total: -5.56 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.35 Total: -39.70 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.08 Total: -13.81 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.96 -6.29 -38.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336209.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.542 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds