Wall clock time and date at job start Sun Mar 29 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21574 * 119.99789 * 0.02562 * 13 12 2 15 15 C 1.47721 * 120.00674 * 180.02562 * 13 12 2 16 16 C 1.39653 * 120.11212 * 359.72674 * 15 13 12 17 17 C 1.37844 * 119.87751 * 179.74779 * 16 15 13 18 18 C 1.38656 * 120.11777 * 0.50359 * 17 16 15 19 19 F 1.35095 * 119.88246 * 179.74541 * 18 17 16 20 20 C 1.38658 * 120.23678 * 359.77099 * 18 17 16 21 21 C 1.37835 * 120.12386 * 359.97366 * 20 18 17 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 27 27 H 1.07996 * 120.06282 * 359.97063 * 16 15 13 28 28 H 1.07996 * 119.94250 * 180.25372 * 17 16 15 29 29 H 1.08004 * 119.93727 * 179.97438 * 20 18 17 30 30 H 1.07993 * 120.06393 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8575 1.1613 2.4118 15 6 2.6397 -0.7143 3.5633 16 6 2.9675 -2.0705 3.5048 17 6 3.4318 -2.7140 4.6319 18 6 3.5637 -2.0197 5.8248 19 9 4.0144 -2.6564 6.9279 20 6 3.2343 -0.6744 5.8899 21 6 2.7740 -0.0199 4.7675 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 2.2490 -1.6317 1.1528 27 1 2.8608 -2.6133 2.5773 28 1 3.6895 -3.7618 4.5868 29 1 3.3385 -0.1384 6.8217 30 1 2.5173 1.0278 4.8194 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336413.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:59 Heat of formation + Delta-G solvation = -64.319749 kcal Electronic energy + Delta-G solvation = -15936.599777 eV Core-core repulsion = 13032.033395 eV Total energy + Delta-G solvation = -2904.566382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.05105 -39.72668 -37.79880 -34.87707 -32.59706 -31.20632 -30.79220 -28.57647 -25.29632 -23.74038 -23.00700 -21.10783 -19.59062 -18.22926 -17.41115 -16.43607 -15.88337 -15.73423 -15.15732 -14.84139 -14.31364 -14.17063 -13.73126 -13.32896 -13.20911 -12.52887 -12.44956 -12.20943 -11.69311 -11.13667 -11.09844 -10.97201 -10.77827 -10.36058 -10.26853 -9.25186 -9.24212 -9.08422 -8.78311 -8.59257 -7.97199 -6.15420 -4.25167 0.75177 1.14570 3.07972 3.22623 3.29690 3.31653 3.95261 4.03055 4.08687 4.34121 4.61144 4.74180 5.07525 5.17017 5.19445 5.35550 5.76036 5.83552 5.98143 6.12179 6.30943 6.71405 6.79846 6.92793 7.10621 7.38097 7.50926 7.65168 7.87041 8.10718 8.57653 8.72690 9.01743 9.42329 10.90622 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.043671 B = 0.005215 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.997151 B = 5368.256758 C = 5820.335301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.700 5.700 13 C 0.542 3.458 14 O -0.549 6.549 15 C -0.131 4.131 16 C -0.060 4.060 17 C -0.161 4.161 18 C 0.109 3.891 19 F -0.140 7.140 20 C -0.163 4.163 21 C -0.037 4.037 22 H 0.027 0.973 23 H 0.015 0.985 24 H 0.091 0.909 25 H 0.265 0.735 26 H 0.388 0.612 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 -6.573 12.761 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.348 5.348 13 C 0.327 3.673 14 O -0.429 6.429 15 C -0.134 4.134 16 C -0.079 4.079 17 C -0.180 4.180 18 C 0.090 3.910 19 F -0.119 7.119 20 C -0.182 4.182 21 C -0.056 4.056 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.222 0.778 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.554 -5.621 12.629 14.273 hybrid contribution 0.499 -1.099 -0.668 1.380 sum 4.053 -6.721 11.962 14.306 Atomic orbital electron populations 1.22082 0.98266 0.99219 1.01015 1.18814 0.91165 0.94090 0.79767 0.93126 1.21193 1.32683 1.13219 0.90273 0.92048 1.24883 0.94783 0.94911 0.99071 1.69899 1.35833 1.22310 1.23957 0.86435 0.79179 0.79253 0.82152 1.20520 1.21037 1.19846 1.46509 1.64311 1.13550 1.10399 1.18124 0.79060 0.86825 0.83308 1.90739 1.51568 1.15557 1.85065 1.20439 1.03127 0.94308 0.95547 1.21287 0.94842 0.93501 0.98280 1.21060 1.04012 1.01194 0.91725 1.17935 0.98774 0.91181 0.83127 1.91494 1.86597 1.82088 1.51724 1.21109 1.03627 0.93009 1.00423 1.21181 0.93491 1.00792 0.90159 0.95390 0.96547 0.89056 0.92513 0.77832 0.84293 0.84325 0.84331 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.62 2.56 -69.08 -0.18 6.44 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.95 8.72 -34.44 -0.30 -14.25 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.78 5.31 -17.82 -0.09 1.68 16 7 N -0.88 -24.57 11.33 55.43 0.63 -23.95 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.70 -14.40 5.02 -55.91 -0.28 -14.68 16 13 C 0.54 10.86 7.73 -12.39 -0.10 10.77 16 14 O -0.55 -13.05 16.01 5.30 0.08 -12.97 16 15 C -0.13 -2.02 5.87 -104.97 -0.62 -2.64 16 16 C -0.06 -0.76 9.54 -39.20 -0.37 -1.13 16 17 C -0.16 -1.80 10.01 -39.57 -0.40 -2.20 16 18 C 0.11 1.28 7.31 -39.27 -0.29 1.00 16 19 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 20 C -0.16 -1.88 10.01 -39.57 -0.40 -2.28 16 21 C -0.04 -0.51 9.59 -39.20 -0.38 -0.89 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 2.44 6.08 -51.93 -0.32 2.12 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.39 6.77 6.57 -40.82 -0.27 6.50 16 27 H 0.14 1.52 6.40 -52.49 -0.34 1.19 16 28 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.15 1.98 7.65 -52.49 -0.40 1.58 16 LS Contribution 269.11 15.07 4.06 4.06 Total: -1.00 -29.88 269.11 -6.21 -36.09 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -2.95 Total: 4.52 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.77 Total: -6.77 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.35 Total: -38.62 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.88 -6.21 -36.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336413.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.230 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds