Wall clock time and date at job start Sun Mar 29 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21574 * 119.99789 * 0.02562 * 13 12 2 15 15 C 1.47721 * 120.00674 * 180.02562 * 13 12 2 16 16 C 1.39653 * 120.11212 * 359.72674 * 15 13 12 17 17 C 1.37844 * 119.87751 * 179.74779 * 16 15 13 18 18 C 1.38656 * 120.11777 * 0.50359 * 17 16 15 19 19 F 1.35095 * 119.88246 * 179.74541 * 18 17 16 20 20 C 1.38658 * 120.23678 * 359.77099 * 18 17 16 21 21 C 1.37835 * 120.12386 * 359.97366 * 20 18 17 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 27 27 H 1.07996 * 120.06282 * 359.97063 * 16 15 13 28 28 H 1.07996 * 119.94250 * 180.25372 * 17 16 15 29 29 H 1.08004 * 119.93727 * 179.97438 * 20 18 17 30 30 H 1.07993 * 120.06393 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8575 1.1613 2.4118 15 6 2.6397 -0.7143 3.5633 16 6 2.9675 -2.0705 3.5048 17 6 3.4318 -2.7140 4.6319 18 6 3.5637 -2.0197 5.8248 19 9 4.0144 -2.6564 6.9279 20 6 3.2343 -0.6744 5.8899 21 6 2.7740 -0.0199 4.7675 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 2.2490 -1.6317 1.1528 27 1 2.8608 -2.6133 2.5773 28 1 3.6895 -3.7618 4.5868 29 1 3.3385 -0.1384 6.8217 30 1 2.5173 1.0278 4.8194 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336413.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:59 Heat of formation + Delta-G solvation = -83.027383 kcal Electronic energy + Delta-G solvation = -15937.411000 eV Core-core repulsion = 13032.033395 eV Total energy + Delta-G solvation = -2905.377606 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.98381 -41.10693 -39.11675 -36.75181 -34.44154 -32.36403 -32.01167 -30.27810 -27.34578 -25.05964 -24.01150 -22.73547 -21.26634 -19.59820 -18.60058 -17.80807 -17.50406 -16.82354 -16.66661 -16.24225 -15.87585 -15.61444 -14.94855 -14.63352 -14.39517 -14.15840 -13.86615 -13.62691 -13.26491 -12.99417 -12.83196 -12.71522 -12.29158 -12.13732 -12.04362 -11.11166 -10.91602 -10.59927 -10.19693 -9.97944 -9.65751 -8.17224 -6.35053 -0.33827 0.19895 1.46692 1.47509 1.57991 1.81565 2.32590 2.55346 2.74897 3.12822 3.13704 3.67965 3.81024 3.88395 4.20130 4.28849 4.70710 4.80367 4.89227 4.91589 5.01914 5.07445 5.11109 5.27214 5.43095 5.58010 5.66711 5.76503 5.89344 6.08424 6.71652 6.89121 7.30552 7.47296 8.89310 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.043671 B = 0.005215 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.997151 B = 5368.256758 C = 5820.335301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H 0.001 0.999 4 C -0.547 4.547 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.696 5.696 13 C 0.540 3.460 14 O -0.597 6.597 15 C -0.154 4.154 16 C -0.053 4.053 17 C -0.151 4.151 18 C 0.114 3.886 19 F -0.136 7.136 20 C -0.155 4.155 21 C -0.044 4.044 22 H 0.042 0.958 23 H 0.012 0.988 24 H 0.067 0.933 25 H 0.266 0.734 26 H 0.405 0.595 27 H 0.156 0.844 28 H 0.170 0.830 29 H 0.165 0.835 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -9.154 13.584 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.018 0.982 4 C -0.585 4.585 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.328 3.672 14 O -0.480 6.480 15 C -0.158 4.158 16 C -0.072 4.072 17 C -0.170 4.170 18 C 0.095 3.905 19 F -0.115 7.115 20 C -0.174 4.174 21 C -0.063 4.063 22 H 0.061 0.939 23 H 0.031 0.969 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.242 0.758 27 H 0.173 0.827 28 H 0.188 0.812 29 H 0.182 0.818 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.690 -8.247 13.481 16.485 hybrid contribution 0.177 -0.297 -0.797 0.869 sum 4.868 -8.544 12.683 16.049 Atomic orbital electron populations 1.21905 0.98115 0.99630 0.99640 1.18422 0.91284 0.92065 0.81718 0.98157 1.21525 1.32791 1.13579 0.90624 0.90627 1.25805 0.94855 0.95522 1.02357 1.70052 1.37022 1.23851 1.24659 0.85314 0.78999 0.77985 0.77841 1.19589 1.21364 1.18745 1.46213 1.64513 1.14261 1.09501 1.18811 0.77796 0.86377 0.84239 1.90705 1.53574 1.17816 1.85924 1.20093 1.06122 0.95657 0.93899 1.21410 0.94056 0.92115 0.99631 1.21335 1.02480 1.02523 0.90627 1.18079 0.97837 0.91198 0.83399 1.91515 1.86405 1.81963 1.51598 1.21274 1.02370 0.93200 1.00511 1.21175 0.94027 1.00672 0.90426 0.93875 0.96912 0.91380 0.92521 0.75816 0.82691 0.81202 0.81789 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.12 16 2 C 0.27 13.88 2.56 44.25 0.11 14.00 16 3 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 4 C -0.55 -28.50 8.72 25.60 0.22 -28.28 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.78 5.31 84.65 0.45 1.23 16 7 N -0.92 -52.23 11.33 21.45 0.24 -51.99 16 8 Si 0.97 41.29 29.54 68.60 2.03 43.31 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 12 N -0.70 -28.82 5.02 -449.08 -2.25 -31.08 16 13 C 0.54 22.10 7.73 86.75 0.67 22.77 16 14 O -0.60 -29.76 16.01 -3.95 -0.06 -29.82 16 15 C -0.15 -4.66 5.87 -20.09 -0.12 -4.78 16 16 C -0.05 -1.21 9.54 22.52 0.21 -1.00 16 17 C -0.15 -2.80 10.01 22.28 0.22 -2.58 16 18 C 0.11 2.29 7.31 22.47 0.16 2.46 16 19 F -0.14 -2.69 17.26 44.97 0.78 -1.92 16 20 C -0.16 -3.19 10.01 22.27 0.22 -2.97 16 21 C -0.04 -1.17 9.59 22.52 0.22 -0.95 16 22 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.07 3.76 6.08 -2.38 -0.01 3.75 16 25 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.41 13.68 6.57 -92.71 -0.61 13.08 16 27 H 0.16 2.93 6.40 -2.91 -0.02 2.91 16 28 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 30 H 0.14 3.82 7.65 -2.91 -0.02 3.80 16 Total: -1.00 -66.05 269.11 4.33 -61.72 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.56 Total: 15.99 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 3.05 Total: -6.21 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.01 Total: -83.07 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.06 Total: -29.82 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -66.05 4.33 -61.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336413.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.309 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds