Wall clock time and date at job start Sun Mar 29 2020 21:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.50698 * 109.47387 * 119.99880 * 2 1 3 5 5 H 1.07999 * 120.00181 * 119.99635 * 4 2 1 6 6 C 1.37879 * 120.00000 * 300.00183 * 4 2 1 7 7 N 1.31514 * 119.99861 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99854 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.46904 * 90.00242 * 8 6 4 10 10 H 1.48500 * 109.46852 * 210.00146 * 8 6 4 11 11 H 1.48495 * 109.46883 * 329.99702 * 8 6 4 12 12 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 13 13 C 1.34777 * 119.99724 * 85.00158 * 12 2 1 14 14 O 1.21553 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.47849 * 119.99699 * 179.72334 * 13 12 2 16 16 C 1.39599 * 120.13491 * 0.02562 * 15 13 12 17 17 C 1.37942 * 119.90817 * 179.71809 * 16 15 13 18 18 C 1.38348 * 120.17027 * 0.55652 * 17 16 15 19 19 C 1.38553 * 120.26991 * 359.71700 * 18 17 16 20 20 F 1.35099 * 119.95351 * 180.02562 * 19 18 17 21 21 C 1.38210 * 120.09051 * 359.97438 * 19 18 17 22 22 H 1.09003 * 109.47061 * 300.00127 * 1 2 3 23 23 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 24 24 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99653 * 180.02562 * 7 6 4 26 26 H 0.97000 * 119.99792 * 264.99726 * 12 2 1 27 27 H 1.08003 * 120.04564 * 359.97438 * 16 15 13 28 28 H 1.07998 * 119.91509 * 180.27730 * 17 16 15 29 29 H 1.08003 * 119.86443 * 179.74684 * 18 17 16 30 30 H 1.07998 * 120.09104 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8575 1.1610 -2.4119 15 6 2.6457 -0.7137 -3.5628 16 6 2.9834 -2.0669 -3.5020 17 6 3.4427 -2.7126 -4.6311 18 6 3.5803 -2.0198 -5.8207 19 6 3.2525 -0.6753 -5.8879 20 9 3.3889 -0.0051 -7.0530 21 6 2.7854 -0.0190 -4.7648 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.9027 -0.5283 4.4375 26 1 2.2490 -1.6318 -1.1526 27 1 2.8814 -2.6085 -2.5732 28 1 3.6998 -3.7605 -4.5853 29 1 3.9442 -2.5293 -6.7008 30 1 2.5295 1.0289 -4.8172 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336611.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:01 Heat of formation + Delta-G solvation = -55.212814 kcal Electronic energy + Delta-G solvation = -16040.629748 eV Core-core repulsion = 13136.458273 eV Total energy + Delta-G solvation = -2904.171475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.99691 -39.86356 -37.98613 -35.12137 -32.58375 -31.45895 -30.80243 -29.39932 -25.26478 -24.22782 -22.71400 -21.27915 -19.79466 -18.45835 -16.70845 -16.45692 -16.26473 -15.75677 -15.71188 -15.27723 -14.50410 -14.27028 -13.94639 -13.27827 -13.15872 -13.01110 -12.31311 -12.25933 -12.02838 -11.85016 -11.38897 -11.32226 -10.85286 -10.22420 -9.78316 -9.35483 -9.29173 -9.20596 -8.89602 -8.79864 -8.24402 -6.24594 -4.27737 0.70533 1.05429 2.99308 3.21341 3.33685 3.37874 3.66046 3.87778 4.18625 4.28729 4.64222 4.70072 4.96433 5.10006 5.10444 5.20375 5.62159 5.84031 5.93420 6.11305 6.16931 6.26912 6.34048 6.50930 6.68219 6.80940 7.12711 7.19829 7.45148 8.06926 8.43368 8.69101 8.80233 9.35669 10.87435 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.048491 B = 0.005572 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.282471 B = 5023.640132 C = 5412.404953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.235 3.765 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.691 5.691 13 C 0.544 3.456 14 O -0.548 6.548 15 C -0.093 4.093 16 C -0.098 4.098 17 C -0.098 4.098 18 C -0.138 4.138 19 C 0.088 3.912 20 F -0.139 7.139 21 C -0.100 4.100 22 H 0.049 0.951 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.268 0.732 26 H 0.396 0.604 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 -4.062 -15.665 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.132 3.868 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.339 5.339 13 C 0.329 3.671 14 O -0.427 6.427 15 C -0.097 4.097 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.157 4.157 19 C 0.069 3.931 20 F -0.118 7.118 21 C -0.120 4.120 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.230 0.770 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.210 -3.199 -15.480 15.854 hybrid contribution -0.444 0.347 0.076 0.569 sum 0.766 -2.851 -15.404 15.684 Atomic orbital electron populations 1.22456 0.99083 1.00996 0.99465 1.19175 0.90300 0.94784 0.82515 0.93125 1.21007 1.33461 1.14525 0.88466 0.90134 1.24821 0.95448 0.96702 0.95485 1.69864 1.44771 1.40075 0.98073 0.86877 0.80533 0.83586 0.77528 1.20240 1.22085 1.18628 1.46151 1.64320 1.13889 1.09544 1.18149 0.78933 0.86734 0.83290 1.90740 1.51426 1.15532 1.85039 1.20077 1.01090 0.94175 0.94322 1.21518 0.97217 0.93546 0.99371 1.20969 0.98672 1.00377 0.91568 1.21296 1.01879 0.92705 0.99854 1.17559 1.02829 0.90805 0.81935 1.91505 1.93760 1.80482 1.46055 1.21254 0.98440 1.01700 0.90614 0.93306 0.94437 0.92699 0.92219 0.76964 0.84441 0.84382 0.84551 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.96 37.16 0.33 -3.24 16 2 C 0.24 5.55 2.15 -69.08 -0.15 5.40 16 3 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 4 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 5 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.03 13.96 55.43 0.77 -25.25 16 8 Si 0.89 21.51 24.37 -169.99 -4.14 17.36 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 12 N -0.69 -13.53 5.02 -55.88 -0.28 -13.81 16 13 C 0.54 10.41 7.74 -12.33 -0.10 10.32 16 14 O -0.55 -12.40 16.01 5.32 0.09 -12.31 16 15 C -0.09 -1.40 5.87 -104.97 -0.62 -2.02 16 16 C -0.10 -1.15 9.54 -39.18 -0.37 -1.53 16 17 C -0.10 -0.93 10.03 -39.65 -0.40 -1.33 16 18 C -0.14 -1.38 10.02 -39.42 -0.39 -1.78 16 19 C 0.09 1.09 7.29 -39.48 -0.29 0.80 16 20 F -0.14 -1.76 17.26 2.25 0.04 -1.72 16 21 C -0.10 -1.43 9.57 -39.11 -0.37 -1.80 16 22 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 26 H 0.40 6.64 6.57 -40.82 -0.27 6.37 16 27 H 0.14 1.42 6.40 -52.48 -0.34 1.09 16 28 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.15 2.16 7.65 -52.49 -0.40 1.76 16 LS Contribution 262.29 15.07 3.95 3.95 Total: -1.00 -30.94 262.29 -5.16 -36.09 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -2.81 Total: 3.34 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.77 Total: -7.65 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.49 Total: -39.06 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.94 -5.16 -36.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336611.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.118 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds