Wall clock time and date at job start Sun Mar 29 2020 21:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.50698 * 109.47387 * 119.99880 * 2 1 3 5 5 H 1.07999 * 120.00181 * 119.99635 * 4 2 1 6 6 C 1.37879 * 120.00000 * 300.00183 * 4 2 1 7 7 N 1.31514 * 119.99861 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99854 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.46904 * 90.00242 * 8 6 4 10 10 H 1.48500 * 109.46852 * 210.00146 * 8 6 4 11 11 H 1.48495 * 109.46883 * 329.99702 * 8 6 4 12 12 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 13 13 C 1.34777 * 119.99724 * 85.00158 * 12 2 1 14 14 O 1.21553 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.47849 * 119.99699 * 179.72334 * 13 12 2 16 16 C 1.39599 * 120.13491 * 0.02562 * 15 13 12 17 17 C 1.37942 * 119.90817 * 179.71809 * 16 15 13 18 18 C 1.38348 * 120.17027 * 0.55652 * 17 16 15 19 19 C 1.38553 * 120.26991 * 359.71700 * 18 17 16 20 20 F 1.35099 * 119.95351 * 180.02562 * 19 18 17 21 21 C 1.38210 * 120.09051 * 359.97438 * 19 18 17 22 22 H 1.09003 * 109.47061 * 300.00127 * 1 2 3 23 23 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 24 24 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99653 * 180.02562 * 7 6 4 26 26 H 0.97000 * 119.99792 * 264.99726 * 12 2 1 27 27 H 1.08003 * 120.04564 * 359.97438 * 16 15 13 28 28 H 1.07998 * 119.91509 * 180.27730 * 17 16 15 29 29 H 1.08003 * 119.86443 * 179.74684 * 18 17 16 30 30 H 1.07998 * 120.09104 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8575 1.1610 -2.4119 15 6 2.6457 -0.7137 -3.5628 16 6 2.9834 -2.0669 -3.5020 17 6 3.4427 -2.7126 -4.6311 18 6 3.5803 -2.0198 -5.8207 19 6 3.2525 -0.6753 -5.8879 20 9 3.3889 -0.0051 -7.0530 21 6 2.7854 -0.0190 -4.7648 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.9027 -0.5283 4.4375 26 1 2.2490 -1.6318 -1.1526 27 1 2.8814 -2.6085 -2.5732 28 1 3.6998 -3.7605 -4.5853 29 1 3.9442 -2.5293 -6.7008 30 1 2.5295 1.0289 -4.8172 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336611.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:01 Heat of formation + Delta-G solvation = -76.370605 kcal Electronic energy + Delta-G solvation = -16041.547219 eV Core-core repulsion = 13136.458273 eV Total energy + Delta-G solvation = -2905.088946 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.95562 -41.20102 -39.19843 -36.91446 -34.50254 -32.78315 -31.90142 -30.82565 -27.24744 -25.49068 -23.67455 -22.84386 -21.38618 -19.83374 -18.44854 -17.71460 -17.26791 -17.17236 -16.77332 -16.67915 -16.05830 -15.90773 -14.97870 -14.87971 -14.79431 -14.22686 -14.13055 -13.72567 -13.38299 -13.09530 -12.93942 -12.79630 -12.37625 -12.15210 -11.64119 -11.30422 -10.98287 -10.87290 -10.23898 -9.95957 -9.79039 -8.38713 -6.44760 -0.31565 0.12572 1.27375 1.36110 1.45069 1.78472 2.23482 2.26179 2.70717 2.97764 3.21308 3.63920 3.76528 4.03163 4.06400 4.28014 4.42103 4.52580 4.66572 4.69878 4.93554 4.99471 5.05008 5.19082 5.25029 5.30689 5.39298 5.55688 5.78778 6.11418 6.55789 6.75959 7.15599 7.32102 8.76212 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.048491 B = 0.005572 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.282471 B = 5023.640132 C = 5412.404953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.239 3.761 3 H 0.023 0.977 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.936 3.064 9 H -0.258 1.258 10 H -0.292 1.292 11 H -0.265 1.265 12 N -0.689 5.689 13 C 0.543 3.457 14 O -0.591 6.591 15 C -0.117 4.117 16 C -0.092 4.092 17 C -0.083 4.083 18 C -0.118 4.118 19 C 0.078 3.922 20 F -0.143 7.143 21 C -0.115 4.115 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.271 0.729 26 H 0.409 0.591 27 H 0.152 0.848 28 H 0.182 0.818 29 H 0.173 0.827 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -5.741 -17.370 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.135 3.865 3 H 0.041 0.959 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.168 4.168 7 N -0.569 5.569 8 Si 0.763 3.237 9 H -0.184 1.184 10 H -0.219 1.219 11 H -0.190 1.190 12 N -0.338 5.338 13 C 0.332 3.668 14 O -0.474 6.474 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.101 4.101 18 C -0.136 4.136 19 C 0.059 3.941 20 F -0.122 7.122 21 C -0.135 4.135 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.247 0.753 27 H 0.169 0.831 28 H 0.199 0.801 29 H 0.190 0.810 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.217 -4.908 -17.207 17.934 hybrid contribution -0.350 0.785 0.502 0.996 sum 0.867 -4.123 -16.704 17.227 Atomic orbital electron populations 1.22353 0.97581 1.01972 0.99508 1.18847 0.91425 0.93272 0.82973 0.95894 1.21206 1.32529 1.13735 0.89652 0.92042 1.25504 0.96754 0.99175 0.95358 1.69961 1.46511 1.41820 0.98656 0.86053 0.79964 0.80498 0.77174 1.18378 1.21928 1.18962 1.45927 1.64603 1.14480 1.08766 1.18749 0.77731 0.86291 0.84073 1.90704 1.53299 1.17565 1.85827 1.19706 1.04181 0.95615 0.92550 1.21750 0.96261 0.92025 1.01077 1.21432 0.96475 1.02095 0.90054 1.21750 0.99247 0.91303 1.01317 1.17674 1.03405 0.91860 0.81185 1.91497 1.93841 1.80838 1.46027 1.21168 0.99658 1.01202 0.91494 0.93904 0.93677 0.91238 0.91983 0.75335 0.83078 0.80067 0.80988 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.75 8.96 71.98 0.65 -6.10 16 2 C 0.24 11.33 2.15 44.24 0.10 11.42 16 3 H 0.02 1.23 6.63 -2.39 -0.02 1.21 16 4 C -0.53 -28.52 9.31 25.60 0.24 -28.28 16 5 H 0.06 3.45 7.98 -2.91 -0.02 3.43 16 6 C 0.03 1.79 5.45 84.66 0.46 2.26 16 7 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16 8 Si 0.94 44.30 24.37 68.60 1.67 45.97 16 9 H -0.26 -11.44 6.87 99.48 0.68 -10.75 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 11 H -0.26 -12.58 6.53 99.48 0.65 -11.94 16 12 N -0.69 -26.89 5.02 -448.97 -2.25 -29.14 16 13 C 0.54 21.04 7.74 86.79 0.67 21.71 16 14 O -0.59 -27.65 16.01 -3.88 -0.06 -27.71 16 15 C -0.12 -3.44 5.87 -20.09 -0.12 -3.56 16 16 C -0.09 -1.92 9.54 22.53 0.21 -1.71 16 17 C -0.08 -1.19 10.03 22.23 0.22 -0.96 16 18 C -0.12 -1.84 10.02 22.37 0.22 -1.61 16 19 C 0.08 1.77 7.29 22.34 0.16 1.94 16 20 F -0.14 -3.41 17.26 44.97 0.78 -2.63 16 21 C -0.12 -3.26 9.57 22.58 0.22 -3.05 16 22 H 0.04 1.89 3.27 -2.39 -0.01 1.88 16 23 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.41 13.41 6.57 -92.71 -0.61 12.80 16 27 H 0.15 2.67 6.40 -2.91 -0.02 2.66 16 28 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 29 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.13 4.00 7.65 -2.91 -0.02 3.98 16 Total: -1.00 -68.25 262.29 3.95 -64.30 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.49 Total: 11.75 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 3.03 Total: -7.95 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.95 Total: -83.72 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.06 Total: -27.71 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.67 Total: 45.97 kcal Total: -68.25 3.95 -64.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336611.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.073 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds