Wall clock time and date at job start Sun Mar 29 2020 21:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48504 * 109.46825 * 240.00095 * 3 2 1 5 5 H 1.48500 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47617 * 119.99682 * 3 2 1 7 7 C 1.39865 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99446 * 197.96439 * 7 2 1 9 9 C 1.41134 * 120.00551 * 17.96638 * 7 2 1 10 10 C 1.40885 * 120.14986 * 24.60678 * 9 7 2 11 11 C 1.36346 * 119.83220 * 180.02562 * 10 9 7 12 12 C 1.39565 * 120.16478 * 0.25924 * 11 10 9 13 13 N 1.38853 * 119.84635 * 179.72022 * 12 11 10 14 14 C 1.46491 * 120.00392 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47373 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.46912 * 60.00462 * 15 14 13 17 17 O 1.42894 * 109.47289 * 300.00054 * 15 14 13 18 18 C 1.53008 * 109.47180 * 179.97438 * 15 14 13 19 19 O 1.42901 * 109.46757 * 185.00462 * 18 15 14 20 20 C 1.39572 * 120.30966 * 359.48624 * 12 11 10 21 21 C 1.36342 * 120.16301 * 0.51172 * 20 12 11 22 22 H 0.97002 * 119.99580 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.08686 * 0.02562 * 10 9 7 24 24 H 1.08007 * 119.91688 * 179.97438 * 11 10 9 25 25 H 0.97002 * 119.99634 * 0.02562 * 13 12 11 26 26 H 1.09005 * 109.47135 * 300.00091 * 14 13 12 27 27 H 1.08998 * 109.47521 * 59.99863 * 14 13 12 28 28 H 0.96701 * 113.99893 * 299.99886 * 17 15 14 29 29 H 1.08999 * 109.46812 * 305.00216 * 18 15 14 30 30 H 1.08998 * 109.46973 * 65.00269 * 18 15 14 31 31 H 0.96698 * 113.99599 * 180.02562 * 19 18 15 32 32 H 1.08005 * 119.91580 * 180.23056 * 20 12 11 33 33 H 1.08002 * 120.08266 * 179.71907 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6963 -1.2126 5 1 1.2781 2.7464 -0.0006 6 1 3.0969 1.6965 1.2125 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2339 0.2890 9 6 1.3543 -2.4040 -0.3759 10 6 0.2261 -2.3567 -1.2183 11 6 -0.4011 -3.5129 -1.5775 12 6 0.0687 -4.7405 -1.1085 13 7 -0.5785 -5.9134 -1.4738 14 6 -0.0887 -7.2038 -0.9830 15 6 -0.9735 -8.3263 -1.5288 16 1 -0.9421 -8.3164 -2.6184 17 8 -2.3187 -8.1290 -1.0891 18 6 -0.4614 -9.6741 -1.0167 19 8 -1.2143 -10.7293 -1.6182 20 6 1.1891 -4.7952 -0.2779 21 6 1.8262 -3.6471 0.0894 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1411 -1.4071 -1.5787 24 1 -1.2664 -3.4782 -2.2230 25 1 -1.3551 -5.8782 -2.0540 26 1 0.9377 -7.3541 -1.3181 27 1 -0.1203 -7.2140 0.1065 28 1 -2.4218 -8.1264 -0.1276 29 1 0.5914 -9.7852 -1.2764 30 1 -0.5751 -9.7182 0.0664 31 1 -0.9437 -11.6145 -1.3383 32 1 1.5494 -5.7490 0.0784 33 1 2.6903 -3.6906 0.7359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:06 Heat of formation + Delta-G solvation = -81.864359 kcal Electronic energy + Delta-G solvation = -16071.695341 eV Core-core repulsion = 13289.828473 eV Total energy + Delta-G solvation = -2781.866868 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.70082 -37.64584 -36.08792 -34.64134 -32.86921 -30.52020 -29.40868 -28.33960 -25.52259 -23.72429 -22.09237 -20.62175 -20.16129 -17.65451 -17.16572 -16.66241 -16.27533 -16.04287 -15.18155 -14.42214 -14.12684 -13.80569 -13.74317 -12.91640 -12.79006 -12.65753 -12.42952 -11.97312 -11.67252 -11.24278 -11.02737 -10.88425 -10.85847 -10.47776 -10.37361 -10.06146 -9.68874 -9.29953 -9.23383 -8.54891 -7.48969 -6.64472 -6.39207 -4.03416 2.93109 3.10181 3.14735 3.17809 3.36240 3.65375 4.05685 4.34863 4.50079 4.76281 4.82723 4.95926 5.08213 5.22829 5.38422 5.76940 5.83295 6.04736 6.25880 6.30678 6.85111 7.06463 7.20084 7.30050 7.33717 7.57320 7.59908 7.66961 7.80119 8.15087 8.34195 8.48557 8.68758 8.80513 9.06098 9.15340 10.37670 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.076020 B = 0.004253 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.235987 B = 6582.288499 C = 6821.037265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.075 3.925 10 C -0.122 4.122 11 C -0.161 4.161 12 C 0.090 3.910 13 N -0.755 5.755 14 C 0.112 3.888 15 C 0.098 3.902 16 H 0.107 0.893 17 O -0.550 6.550 18 C 0.047 3.953 19 O -0.565 6.565 20 C -0.161 4.161 21 C -0.190 4.190 22 H 0.277 0.723 23 H 0.119 0.881 24 H 0.088 0.912 25 H 0.390 0.610 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.374 0.626 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.377 0.623 32 H 0.085 0.915 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -13.323 -0.793 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.142 4.142 11 C -0.183 4.183 12 C -0.006 4.006 13 N -0.392 5.392 14 C -0.015 4.015 15 C 0.038 3.962 16 H 0.125 0.875 17 O -0.355 6.355 18 C -0.032 4.032 19 O -0.370 6.370 20 C -0.183 4.183 21 C -0.211 4.211 22 H 0.088 0.912 23 H 0.137 0.863 24 H 0.106 0.894 25 H 0.224 0.776 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.221 0.779 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.224 0.776 32 H 0.104 0.896 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.082 -12.726 -1.601 12.872 hybrid contribution 0.600 0.274 0.817 1.050 sum -0.482 -12.453 -0.784 12.487 Atomic orbital electron populations 1.69851 1.07366 1.28763 1.37458 1.25802 0.94660 1.00897 0.92691 0.86453 0.80123 0.80812 0.79727 1.19082 1.20575 1.19277 1.19340 0.97926 0.91397 1.41276 0.90971 1.17489 0.92399 0.91996 0.90866 1.20934 0.98113 0.96365 0.98801 1.20057 1.01544 0.91843 1.04865 1.17349 0.95902 0.85174 1.02220 1.43678 1.35199 1.01919 1.58372 1.21513 0.97080 0.84631 0.98238 1.22141 0.82647 0.90703 1.00681 0.87521 1.86611 1.26276 1.95233 1.27350 1.22854 0.95107 0.88521 0.96714 1.86551 1.62172 1.17213 1.71058 1.19844 0.97955 0.96997 1.03526 1.20543 1.02830 0.92675 1.05007 0.91231 0.86288 0.89428 0.77631 0.92620 0.93230 0.77911 0.92465 0.93079 0.77606 0.89646 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.58 10.96 55.54 0.61 -20.97 16 2 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 3 Si 0.90 19.31 29.60 -169.99 -5.03 14.28 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.47 -12.80 9.03 -37.87 -0.34 -13.15 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.08 2.06 5.57 -106.80 -0.60 1.46 16 10 C -0.12 -3.24 8.64 -39.26 -0.34 -3.58 16 11 C -0.16 -3.84 9.82 -39.77 -0.39 -4.23 16 12 C 0.09 2.00 6.67 -83.69 -0.56 1.44 16 13 N -0.75 -13.39 5.59 -58.51 -0.33 -13.72 16 14 C 0.11 1.56 4.55 -4.05 -0.02 1.54 16 15 C 0.10 1.17 3.33 -26.73 -0.09 1.08 16 16 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 17 O -0.55 -7.25 13.05 -40.06 -0.52 -7.77 16 18 C 0.05 0.44 6.68 37.16 0.25 0.68 16 19 O -0.57 -5.74 13.62 -40.06 -0.55 -6.28 16 20 C -0.16 -3.63 9.23 -39.77 -0.37 -4.00 16 21 C -0.19 -4.75 9.74 -39.27 -0.38 -5.13 16 22 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 23 H 0.12 3.26 6.16 -52.48 -0.32 2.94 16 24 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 25 H 0.39 6.66 8.35 -40.82 -0.34 6.32 16 26 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 27 H 0.05 0.68 7.94 -51.93 -0.41 0.27 16 28 H 0.37 3.78 9.05 45.56 0.41 4.19 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.38 1.93 9.12 45.56 0.42 2.35 16 32 H 0.09 1.69 6.68 -52.48 -0.35 1.34 16 33 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 284.49 15.07 4.29 4.29 Total: -1.00 -31.15 284.49 -7.13 -38.28 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -2.67 Total: 13.93 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -2.92 Total: -22.03 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.28 Total: -34.69 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.07 Total: -14.06 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.15 -7.13 -38.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.586 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds