Wall clock time and date at job start Sun Mar 29 2020 21:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48504 * 109.46825 * 240.00095 * 3 2 1 5 5 H 1.48500 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47617 * 119.99682 * 3 2 1 7 7 C 1.39865 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99446 * 197.96439 * 7 2 1 9 9 C 1.41134 * 120.00551 * 17.96638 * 7 2 1 10 10 C 1.40885 * 120.14986 * 24.60678 * 9 7 2 11 11 C 1.36346 * 119.83220 * 180.02562 * 10 9 7 12 12 C 1.39565 * 120.16478 * 0.25924 * 11 10 9 13 13 N 1.38853 * 119.84635 * 179.72022 * 12 11 10 14 14 C 1.46491 * 120.00392 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47373 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.46912 * 60.00462 * 15 14 13 17 17 O 1.42894 * 109.47289 * 300.00054 * 15 14 13 18 18 C 1.53008 * 109.47180 * 179.97438 * 15 14 13 19 19 O 1.42901 * 109.46757 * 185.00462 * 18 15 14 20 20 C 1.39572 * 120.30966 * 359.48624 * 12 11 10 21 21 C 1.36342 * 120.16301 * 0.51172 * 20 12 11 22 22 H 0.97002 * 119.99580 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.08686 * 0.02562 * 10 9 7 24 24 H 1.08007 * 119.91688 * 179.97438 * 11 10 9 25 25 H 0.97002 * 119.99634 * 0.02562 * 13 12 11 26 26 H 1.09005 * 109.47135 * 300.00091 * 14 13 12 27 27 H 1.08998 * 109.47521 * 59.99863 * 14 13 12 28 28 H 0.96701 * 113.99893 * 299.99886 * 17 15 14 29 29 H 1.08999 * 109.46812 * 305.00216 * 18 15 14 30 30 H 1.08998 * 109.46973 * 65.00269 * 18 15 14 31 31 H 0.96698 * 113.99599 * 180.02562 * 19 18 15 32 32 H 1.08005 * 119.91580 * 180.23056 * 20 12 11 33 33 H 1.08002 * 120.08266 * 179.71907 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6963 -1.2126 5 1 1.2781 2.7464 -0.0006 6 1 3.0969 1.6965 1.2125 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2339 0.2890 9 6 1.3543 -2.4040 -0.3759 10 6 0.2261 -2.3567 -1.2183 11 6 -0.4011 -3.5129 -1.5775 12 6 0.0687 -4.7405 -1.1085 13 7 -0.5785 -5.9134 -1.4738 14 6 -0.0887 -7.2038 -0.9830 15 6 -0.9735 -8.3263 -1.5288 16 1 -0.9421 -8.3164 -2.6184 17 8 -2.3187 -8.1290 -1.0891 18 6 -0.4614 -9.6741 -1.0167 19 8 -1.2143 -10.7293 -1.6182 20 6 1.1891 -4.7952 -0.2779 21 6 1.8262 -3.6471 0.0894 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1411 -1.4071 -1.5787 24 1 -1.2664 -3.4782 -2.2230 25 1 -1.3551 -5.8782 -2.0540 26 1 0.9377 -7.3541 -1.3181 27 1 -0.1203 -7.2140 0.1065 28 1 -2.4218 -8.1264 -0.1276 29 1 0.5914 -9.7852 -1.2764 30 1 -0.5751 -9.7182 0.0664 31 1 -0.9437 -11.6145 -1.3383 32 1 1.5494 -5.7490 0.0784 33 1 2.6903 -3.6906 0.7359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:06 Heat of formation + Delta-G solvation = -106.932141 kcal Electronic energy + Delta-G solvation = -16072.782362 eV Core-core repulsion = 13289.828473 eV Total energy + Delta-G solvation = -2782.953889 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01080 -39.06038 -37.02067 -36.18981 -34.59364 -31.92276 -31.15553 -29.96984 -26.94434 -25.30649 -23.31528 -22.22874 -21.93305 -19.14120 -18.41603 -17.72597 -17.62182 -17.13262 -16.95798 -15.94334 -15.54457 -15.11322 -14.88596 -14.36711 -14.29621 -13.98109 -13.85840 -13.60728 -13.41462 -13.00045 -12.73247 -12.58638 -12.26106 -11.84012 -11.56151 -11.19441 -11.10526 -11.06441 -10.94299 -10.31431 -9.40475 -8.55243 -8.17124 -6.00966 1.10574 1.19157 1.40694 1.51687 1.60426 2.27732 2.63793 2.84712 3.37819 3.51046 3.84986 4.00169 4.08963 4.23630 4.44821 4.47455 4.50192 4.56905 4.71332 5.00537 5.07543 5.17707 5.31166 5.41398 5.73982 5.75206 5.91815 6.18610 6.40725 6.66884 6.75306 6.87596 6.90184 7.08460 7.12116 7.28009 8.48311 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.076020 B = 0.004253 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.235987 B = 6582.288499 C = 6821.037265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.508 4.508 8 H 0.069 0.931 9 C 0.036 3.964 10 C -0.142 4.142 11 C -0.176 4.176 12 C 0.110 3.890 13 N -0.749 5.749 14 C 0.109 3.891 15 C 0.104 3.896 16 H 0.095 0.905 17 O -0.570 6.570 18 C 0.052 3.948 19 O -0.589 6.589 20 C -0.165 4.165 21 C -0.198 4.198 22 H 0.282 0.718 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.394 0.606 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.386 0.614 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.120 0.880 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -14.950 -0.542 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.539 4.539 8 H 0.087 0.913 9 C 0.033 3.967 10 C -0.162 4.162 11 C -0.199 4.199 12 C 0.011 3.989 13 N -0.385 5.385 14 C -0.016 4.016 15 C 0.044 3.956 16 H 0.113 0.887 17 O -0.377 6.377 18 C -0.027 4.027 19 O -0.398 6.398 20 C -0.187 4.187 21 C -0.218 4.218 22 H 0.093 0.907 23 H 0.117 0.883 24 H 0.121 0.879 25 H 0.228 0.772 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.235 0.765 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.138 0.862 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.731 -14.424 -1.343 14.505 hybrid contribution 0.412 0.540 0.714 0.985 sum -0.319 -13.885 -0.629 13.902 Atomic orbital electron populations 1.69921 1.08797 1.29879 1.38399 1.26631 0.95448 1.04155 0.91805 0.85333 0.78741 0.76223 0.79818 1.18780 1.19536 1.18541 1.19589 0.98103 0.92777 1.43404 0.91270 1.17819 0.93516 0.93149 0.92239 1.20858 0.98920 0.96589 0.99855 1.20244 1.02118 0.92006 1.05486 1.17454 0.95141 0.86090 1.00216 1.43787 1.34759 1.02111 1.57795 1.21729 0.97890 0.83191 0.98789 1.22046 0.81888 0.91631 1.00040 0.88670 1.86580 1.26996 1.95379 1.28697 1.22770 0.95574 0.86835 0.97509 1.86482 1.62851 1.18749 1.71673 1.20128 0.97711 0.97670 1.03226 1.20776 1.03186 0.92860 1.04948 0.90746 0.88302 0.87894 0.77169 0.91638 0.92224 0.76476 0.90769 0.91260 0.75118 0.86236 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.40 10.96 21.82 0.24 -46.16 16 2 C 0.03 1.67 5.13 85.22 0.44 2.11 16 3 Si 0.98 40.25 29.60 68.60 2.03 42.28 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.51 -28.66 9.03 23.38 0.21 -28.45 16 8 H 0.07 3.77 7.91 -2.91 -0.02 3.74 16 9 C 0.04 2.00 5.57 -21.27 -0.12 1.88 16 10 C -0.14 -7.77 8.64 22.48 0.19 -7.58 16 11 C -0.18 -8.42 9.82 22.15 0.22 -8.20 16 12 C 0.11 4.70 6.67 38.67 0.26 4.96 16 13 N -0.75 -24.78 5.59 -339.01 -1.90 -26.68 16 14 C 0.11 2.68 4.55 86.38 0.39 3.07 16 15 C 0.10 2.19 3.33 30.60 0.10 2.29 16 16 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 17 O -0.57 -13.67 13.05 -144.37 -1.88 -15.56 16 18 C 0.05 0.78 6.68 71.98 0.48 1.26 16 19 O -0.59 -10.25 13.62 -144.37 -1.97 -12.22 16 20 C -0.17 -7.15 9.23 22.15 0.20 -6.95 16 21 C -0.20 -9.85 9.74 22.47 0.22 -9.63 16 22 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 23 H 0.10 5.70 6.16 -2.91 -0.02 5.68 16 24 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 25 H 0.39 12.64 8.35 -92.71 -0.77 11.87 16 26 H 0.07 1.54 7.92 -2.38 -0.02 1.52 16 27 H 0.06 1.40 7.94 -2.39 -0.02 1.38 16 28 H 0.39 6.81 9.05 -74.06 -0.67 6.14 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.40 2.89 9.12 -74.06 -0.68 2.21 16 32 H 0.12 4.30 6.68 -2.91 -0.02 4.28 16 33 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -68.00 284.49 -1.85 -69.85 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.97 Total: 33.72 kcal Atomic # 6 Polarization: -47.83 SS G_CDS: 2.60 Total: -45.23 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.66 Total: -72.84 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -3.85 Total: -27.78 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -68.00 -1.85 -69.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.087 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds