Wall clock time and date at job start Sun Mar 29 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00271 * 2 1 4 4 H 1.48495 * 109.47378 * 269.99839 * 3 2 1 5 5 H 1.48505 * 109.47319 * 29.99986 * 3 2 1 6 6 H 1.48506 * 109.47317 * 149.99848 * 3 2 1 7 7 C 1.37887 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46799 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47102 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99848 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00125 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99549 * 179.97438 * 12 11 10 15 15 C 1.53008 * 109.46700 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.46697 * 180.02562 * 15 14 12 17 17 C 1.34511 * 125.79278 * 90.00315 * 16 15 14 18 18 C 1.41386 * 106.84141 * 180.02562 * 17 16 15 19 19 C 1.34507 * 106.84010 * 0.02562 * 18 17 16 20 20 O 1.34304 * 108.42311 * 359.97438 * 19 18 17 21 21 H 0.97001 * 119.99815 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47498 * 59.99875 * 9 7 2 23 23 H 1.09004 * 109.47384 * 299.99429 * 9 7 2 24 24 H 1.08994 * 109.47198 * 59.99691 * 10 9 7 25 25 H 1.09003 * 109.46881 * 299.99340 * 10 9 7 26 26 H 0.96997 * 119.99730 * 359.97438 * 11 10 9 27 27 H 1.09001 * 109.46890 * 60.00787 * 14 12 11 28 28 H 1.08995 * 109.47695 * 300.00353 * 14 12 11 29 29 H 1.08994 * 109.46939 * 60.00298 * 15 14 12 30 30 H 1.09003 * 109.47242 * 299.99884 * 15 14 12 31 31 H 1.07999 * 126.58024 * 359.97438 * 17 16 15 32 32 H 1.08004 * 126.57483 * 179.97438 * 18 17 16 33 33 H 1.08004 * 125.79019 * 180.26381 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 7 1.5127 -4.9309 0.0024 12 6 2.1865 -6.0981 0.0031 13 8 3.3993 -6.0981 0.0027 14 6 1.4329 -7.4031 0.0043 15 6 2.4272 -8.5661 0.0055 16 6 1.6736 -9.8711 0.0060 17 6 1.2806 -10.5532 -1.0847 18 6 0.6112 -11.7105 -0.6250 19 6 0.6346 -11.6662 0.7191 20 8 1.2796 -10.5500 1.0958 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8712 -3.6040 0.8922 25 1 2.8725 -3.6049 -0.8878 26 1 0.5427 -4.9308 0.0024 27 1 0.8061 -7.4615 -0.8855 28 1 0.8065 -7.4602 0.8944 29 1 3.0537 -8.5075 0.8954 30 1 3.0539 -8.5093 -0.8846 31 1 1.4443 -10.2705 -2.1141 32 1 0.1657 -12.4817 -1.2360 33 1 0.2111 -12.4055 1.3829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:22 Heat of formation + Delta-G solvation = -45.792082 kcal Electronic energy + Delta-G solvation = -15575.854294 eV Core-core repulsion = 12795.551637 eV Total energy + Delta-G solvation = -2780.302657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.69909 -39.30220 -35.01390 -34.03140 -32.93623 -32.82078 -30.00208 -28.65315 -25.35362 -23.81538 -21.89620 -21.02090 -20.51259 -19.93901 -17.61985 -16.71828 -16.37306 -15.99916 -15.63575 -15.03718 -14.60876 -14.41658 -13.96496 -13.25021 -12.98020 -12.89025 -12.73301 -12.40490 -12.22673 -12.06484 -11.21808 -11.16280 -11.03247 -10.64997 -10.34147 -10.08295 -9.83430 -9.49187 -9.22281 -8.58942 -8.55799 -8.36704 -6.10432 -4.13327 1.57203 2.45506 2.83969 2.97781 3.28884 3.35012 3.39022 3.70801 4.40654 4.56403 4.82851 4.85603 4.91178 5.05326 5.23309 5.26646 5.51619 5.59613 5.66327 5.84360 5.87018 6.03245 6.32951 6.33689 6.35592 6.72653 6.90254 7.00063 7.50387 7.60401 7.87677 7.99284 8.26491 8.62470 8.92772 9.51589 11.01180 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.073491 B = 0.003328 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.909800 B = 8412.458522 C = 8589.574960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.722 5.722 12 C 0.506 3.494 13 O -0.553 6.553 14 C -0.139 4.139 15 C -0.025 4.025 16 C -0.004 4.004 17 C -0.214 4.214 18 C -0.214 4.214 19 C -0.048 4.048 20 O -0.176 6.176 21 H 0.262 0.738 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.398 0.602 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 -20.666 -0.346 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.372 5.372 12 C 0.291 3.709 13 O -0.432 6.432 14 C -0.179 4.179 15 C -0.062 4.062 16 C -0.054 4.054 17 C -0.233 4.233 18 C -0.233 4.233 19 C -0.115 4.115 20 O -0.072 6.072 21 H 0.072 0.928 22 H 0.041 0.959 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.232 0.768 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.394 -20.416 -0.046 20.420 hybrid contribution -0.317 0.742 -0.232 0.840 sum -0.711 -19.674 -0.278 19.689 Atomic orbital electron populations 1.69956 1.06098 1.26892 1.50369 1.25004 0.94901 0.99436 0.94974 0.86506 0.79841 0.82969 0.78206 1.20549 1.21157 1.19718 1.21058 0.93257 0.90409 1.51367 0.92242 1.19327 0.94207 0.91148 0.97847 1.21733 0.96064 0.81573 1.00797 1.46348 1.10602 1.06611 1.73605 1.20470 0.88208 0.85554 0.76648 1.90680 1.14020 1.87894 1.50583 1.21674 0.99166 0.92076 1.04962 1.19865 0.95646 0.84933 1.05768 1.22573 1.02205 0.96526 0.84114 1.21637 1.05163 0.96865 0.99627 1.21838 1.05845 1.00778 0.94847 1.24011 1.01324 0.90063 0.96143 1.84038 1.57515 1.30410 1.35222 0.92831 0.95937 0.95937 0.92553 0.92541 0.76805 0.88584 0.88699 0.89210 0.87970 0.83423 0.83583 0.78265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 11 N -0.72 -12.29 5.56 -60.29 -0.33 -12.62 16 12 C 0.51 8.16 7.83 -10.99 -0.09 8.07 16 13 O -0.55 -10.95 15.98 5.56 0.09 -10.86 16 14 C -0.14 -1.59 5.68 -27.88 -0.16 -1.75 16 15 C -0.02 -0.28 5.04 -27.88 -0.14 -0.42 16 16 C 0.00 -0.04 6.57 -35.63 -0.23 -0.28 16 17 C -0.21 -2.22 10.81 -39.70 -0.43 -2.65 16 18 C -0.21 -1.97 10.91 -39.70 -0.43 -2.41 16 19 C -0.05 -0.43 12.09 29.41 0.36 -0.07 16 20 O -0.18 -2.03 10.65 5.70 0.06 -1.97 16 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.40 5.82 8.47 -40.82 -0.35 5.47 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 31 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.20 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 294.28 15.07 4.43 4.43 Total: -1.00 -32.27 294.28 -6.27 -38.54 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.53 Total: 1.58 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.70 Total: -10.08 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.40 Total: -37.98 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.15 Total: -12.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.27 -6.27 -38.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.253 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds