Wall clock time and date at job start Sun Mar 29 2020 21:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00271 * 2 1 4 4 H 1.48495 * 109.47378 * 269.99839 * 3 2 1 5 5 H 1.48505 * 109.47319 * 29.99986 * 3 2 1 6 6 H 1.48506 * 109.47317 * 149.99848 * 3 2 1 7 7 C 1.37887 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46799 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47102 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99848 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00125 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99549 * 179.97438 * 12 11 10 15 15 C 1.53008 * 109.46700 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.46697 * 180.02562 * 15 14 12 17 17 C 1.34511 * 125.79278 * 90.00315 * 16 15 14 18 18 C 1.41386 * 106.84141 * 180.02562 * 17 16 15 19 19 C 1.34507 * 106.84010 * 0.02562 * 18 17 16 20 20 O 1.34304 * 108.42311 * 359.97438 * 19 18 17 21 21 H 0.97001 * 119.99815 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47498 * 59.99875 * 9 7 2 23 23 H 1.09004 * 109.47384 * 299.99429 * 9 7 2 24 24 H 1.08994 * 109.47198 * 59.99691 * 10 9 7 25 25 H 1.09003 * 109.46881 * 299.99340 * 10 9 7 26 26 H 0.96997 * 119.99730 * 359.97438 * 11 10 9 27 27 H 1.09001 * 109.46890 * 60.00787 * 14 12 11 28 28 H 1.08995 * 109.47695 * 300.00353 * 14 12 11 29 29 H 1.08994 * 109.46939 * 60.00298 * 15 14 12 30 30 H 1.09003 * 109.47242 * 299.99884 * 15 14 12 31 31 H 1.07999 * 126.58024 * 359.97438 * 17 16 15 32 32 H 1.08004 * 126.57483 * 179.97438 * 18 17 16 33 33 H 1.08004 * 125.79019 * 180.26381 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 7 1.5127 -4.9309 0.0024 12 6 2.1865 -6.0981 0.0031 13 8 3.3993 -6.0981 0.0027 14 6 1.4329 -7.4031 0.0043 15 6 2.4272 -8.5661 0.0055 16 6 1.6736 -9.8711 0.0060 17 6 1.2806 -10.5532 -1.0847 18 6 0.6112 -11.7105 -0.6250 19 6 0.6346 -11.6662 0.7191 20 8 1.2796 -10.5500 1.0958 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8712 -3.6040 0.8922 25 1 2.8725 -3.6049 -0.8878 26 1 0.5427 -4.9308 0.0024 27 1 0.8061 -7.4615 -0.8855 28 1 0.8065 -7.4602 0.8944 29 1 3.0537 -8.5075 0.8954 30 1 3.0539 -8.5093 -0.8846 31 1 1.4443 -10.2705 -2.1141 32 1 0.1657 -12.4817 -1.2360 33 1 0.2111 -12.4055 1.3829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:21 Heat of formation + Delta-G solvation = -66.935763 kcal Electronic energy + Delta-G solvation = -15576.771153 eV Core-core repulsion = 12795.551637 eV Total energy + Delta-G solvation = -2781.219516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.44996 -40.68584 -36.66851 -35.02675 -34.80973 -33.67663 -31.70509 -29.70338 -26.98046 -25.14625 -22.83886 -22.62485 -21.51879 -21.08303 -18.69575 -18.33671 -17.68739 -16.98213 -16.85835 -16.56375 -16.36249 -15.60875 -15.25616 -14.60763 -14.33742 -14.12806 -13.69336 -13.49917 -13.27028 -13.21160 -13.03518 -12.90830 -12.52746 -12.23544 -12.05149 -11.66728 -11.46587 -10.89246 -10.78582 -10.60728 -10.00093 -9.34887 -8.24579 -6.35045 0.81838 1.41837 1.42177 1.53702 1.66753 1.73535 2.07354 2.34474 2.50481 3.10200 3.66372 3.91713 4.06239 4.17090 4.19593 4.35119 4.49726 4.50976 4.62368 4.77448 4.86298 4.97675 5.00749 5.10723 5.27014 5.31879 5.50248 5.58494 5.65970 5.78888 6.16244 6.25892 6.64105 6.78508 7.29415 7.34380 8.87247 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.073491 B = 0.003328 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.909800 B = 8412.458522 C = 8589.574960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.719 5.719 12 C 0.506 3.494 13 O -0.591 6.591 14 C -0.124 4.124 15 C -0.019 4.019 16 C -0.026 4.026 17 C -0.217 4.217 18 C -0.227 4.227 19 C -0.046 4.046 20 O -0.195 6.195 21 H 0.266 0.734 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.412 0.588 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 -21.625 -0.493 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.370 5.370 12 C 0.294 3.706 13 O -0.472 6.472 14 C -0.163 4.163 15 C -0.057 4.057 16 C -0.075 4.075 17 C -0.236 4.236 18 C -0.246 4.246 19 C -0.112 4.112 20 O -0.092 6.092 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.248 0.752 27 H 0.139 0.861 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.177 0.823 32 H 0.186 0.814 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.822 -21.399 -0.197 21.415 hybrid contribution -0.219 0.948 -0.186 0.990 sum -1.041 -20.451 -0.383 20.481 Atomic orbital electron populations 1.70056 1.07534 1.28017 1.51004 1.25876 0.95804 1.03111 0.94408 0.85446 0.78618 0.78451 0.78544 1.19722 1.20501 1.19095 1.21488 0.93596 0.92022 1.51551 0.92342 1.19138 0.94246 0.91788 0.96367 1.21217 0.95045 0.82446 0.99770 1.46183 1.11213 1.05648 1.73916 1.21245 0.87903 0.86445 0.74959 1.90665 1.15982 1.88464 1.52095 1.21634 0.98879 0.88907 1.06899 1.19734 0.95485 0.85359 1.05098 1.22473 1.03633 0.96901 0.84534 1.21939 1.04578 0.97111 0.99991 1.22188 1.06004 1.01019 0.95359 1.24795 0.99948 0.89511 0.96971 1.84025 1.58127 1.31371 1.35659 0.92522 0.97242 0.97337 0.93683 0.93508 0.75235 0.86140 0.86987 0.90508 0.88175 0.82346 0.81424 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -30.67 9.11 25.60 0.23 -30.44 16 8 H 0.06 3.20 7.74 -2.92 -0.02 3.18 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.14 5.95 5.61 86.38 0.48 6.43 16 11 N -0.72 -24.14 5.56 -463.04 -2.57 -26.71 16 12 C 0.51 16.01 7.83 87.66 0.69 16.70 16 13 O -0.59 -23.48 15.98 -3.03 -0.05 -23.53 16 14 C -0.12 -2.64 5.68 29.85 0.17 -2.47 16 15 C -0.02 -0.42 5.04 29.85 0.15 -0.27 16 16 C -0.03 -0.55 6.57 24.83 0.16 -0.39 16 17 C -0.22 -4.12 10.81 22.19 0.24 -3.88 16 18 C -0.23 -3.64 10.91 22.19 0.24 -3.39 16 19 C -0.05 -0.70 12.09 66.97 0.81 0.10 16 20 O -0.19 -4.21 10.65 -2.51 -0.03 -4.23 16 21 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 22 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 23 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.41 11.65 8.47 -92.71 -0.79 10.87 16 27 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 30 H 0.10 2.21 8.10 -2.39 -0.02 2.19 16 31 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -69.02 294.28 3.77 -65.24 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.32 Total: 13.11 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 3.79 Total: -15.50 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.29 Total: -80.71 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.08 Total: -27.76 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -69.02 3.77 -65.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.693 kcal (2) G-P(sol) polarization free energy of solvation -69.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds