Wall clock time and date at job start Sun Mar 29 2020 22:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.43747 * 2 1 4 4 C 1.47019 * 105.95198 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19008 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99934 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99915 * 0.02562 * 5 4 3 8 8 C 1.46495 * 119.99858 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47102 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47197 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00259 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00141 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99634 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00256 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47310 * 59.99552 * 14 12 10 16 16 H 1.48495 * 109.47079 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46658 * 299.99680 * 14 12 10 18 18 C 1.36413 * 105.62051 * 359.97438 * 4 3 2 19 19 C 1.50701 * 125.80425 * 180.02562 * 18 4 3 20 20 O 1.33661 * 108.39213 * 359.77210 * 18 4 3 21 21 H 1.09002 * 109.47152 * 90.00216 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00316 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00297 * 1 2 3 24 24 H 1.07998 * 127.02387 * 359.93891 * 3 2 1 25 25 H 0.97002 * 119.99893 * 359.97438 * 7 5 4 26 26 H 1.08998 * 109.47061 * 299.99457 * 8 7 5 27 27 H 1.08998 * 109.47445 * 59.99668 * 8 7 5 28 28 H 1.09001 * 109.47401 * 299.99954 * 9 8 7 29 29 H 1.09004 * 109.46885 * 60.00086 * 9 8 7 30 30 H 0.97002 * 119.99677 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.46794 * 89.99963 * 19 18 4 32 32 H 1.08998 * 109.46574 * 209.99835 * 19 18 4 33 33 H 1.08994 * 109.46424 * 329.99461 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 6.0484 3.5629 -0.0009 9 6 5.6821 5.0483 -0.0019 10 6 6.9413 5.8762 -0.0021 11 1 7.9064 5.3914 -0.0021 12 6 6.8613 7.2528 -0.0024 13 7 5.6861 7.8431 -0.0030 14 14 8.4221 8.2790 -0.0035 15 1 9.2198 7.9657 -1.2162 16 1 8.0665 9.7208 -0.0043 17 1 9.2208 7.9664 1.2088 18 6 3.5791 -0.7582 0.0015 19 6 4.7391 -1.7202 0.0030 20 8 2.2852 -1.0935 0.0065 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.9596 2.1230 -0.0009 25 1 3.9576 3.1935 -0.0005 26 1 6.6347 3.3335 0.8889 27 1 6.6339 3.3328 -0.8910 28 1 5.0960 5.2775 -0.8919 29 1 5.0964 5.2787 0.8881 30 1 5.6299 8.8115 -0.0029 31 1 5.0180 -1.9514 1.0310 32 1 4.4509 -2.6375 -0.5104 33 1 5.5871 -1.2674 -0.5107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138144.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:28 Heat of formation + Delta-G solvation = -46.345871 kcal Electronic energy + Delta-G solvation = -16026.202398 eV Core-core repulsion = 13245.875727 eV Total energy + Delta-G solvation = -2780.326671 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.58459 -38.90386 -34.87976 -33.30379 -32.85439 -32.69774 -29.97803 -29.15380 -25.59087 -24.57550 -22.83146 -21.30382 -20.49274 -19.22892 -17.13160 -16.50455 -16.34329 -15.52795 -15.05600 -14.70379 -14.48500 -13.98183 -13.59432 -13.49607 -12.97262 -12.91267 -12.88631 -12.69724 -12.47218 -12.27140 -11.58943 -11.19630 -11.01404 -10.64988 -10.31587 -9.82043 -9.71847 -9.48382 -9.21996 -8.56440 -8.42390 -8.25080 -6.08355 -4.11190 1.44850 2.02681 2.68382 3.32039 3.35720 3.38797 3.69023 3.78329 4.41055 4.43825 4.79256 4.97244 5.09846 5.23693 5.28641 5.30279 5.40125 5.49028 5.56234 5.72229 5.92333 6.16714 6.29455 6.36958 6.40743 6.75556 6.95531 7.05600 7.53109 7.63017 7.89833 8.06773 8.29185 8.69083 8.94570 9.53469 11.03297 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041010 B = 0.004457 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.593905 B = 6280.434214 C = 6931.975667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.020 4.020 3 C -0.184 4.184 4 C -0.234 4.234 5 C 0.580 3.420 6 O -0.553 6.553 7 N -0.714 5.714 8 C 0.122 3.878 9 C 0.012 3.988 10 C -0.522 4.522 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.067 3.933 19 C -0.079 4.079 20 O -0.178 6.178 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.157 0.843 25 H 0.397 0.603 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 -15.719 -0.013 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.203 4.203 4 C -0.239 4.239 5 C 0.367 3.633 6 O -0.434 6.434 7 N -0.362 5.362 8 C 0.000 4.000 9 C -0.025 4.025 10 C -0.561 4.561 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C 0.014 3.986 19 C -0.135 4.135 20 O -0.075 6.075 21 H 0.099 0.901 22 H 0.108 0.892 23 H 0.094 0.906 24 H 0.175 0.825 25 H 0.231 0.769 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.660 -16.170 -0.010 18.835 hybrid contribution 0.308 1.191 0.014 1.230 sum -9.352 -14.978 0.003 17.658 Atomic orbital electron populations 1.20311 0.84807 1.04090 1.03564 1.22190 0.93905 0.83766 1.06979 1.22662 0.90924 0.99611 1.07091 1.21327 0.94138 0.93353 1.15062 1.17236 0.87073 0.82356 0.76641 1.90710 1.28792 1.72056 1.51848 1.46137 1.11351 1.05399 1.73350 1.21741 0.84620 0.92757 1.00862 1.19323 0.97876 0.87453 0.97852 1.21018 0.92489 0.91118 1.51450 0.92270 1.24994 0.96287 0.97994 0.94969 1.69948 1.23264 1.09807 1.50328 0.86566 0.83228 0.78918 0.78786 1.20104 1.21243 1.20099 1.22748 0.82732 0.94144 0.98946 1.20580 0.92263 0.96398 1.04246 1.83665 1.16255 1.35621 1.72004 0.90085 0.89159 0.90628 0.82505 0.76887 0.92445 0.92456 0.95934 0.95936 0.92799 0.89552 0.90750 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.40 36.01 0.37 -0.14 16 2 C -0.02 -0.24 7.28 -35.74 -0.26 -0.50 16 3 C -0.18 -2.40 10.48 -37.45 -0.39 -2.79 16 4 C -0.23 -3.69 6.31 -103.28 -0.65 -4.35 16 5 C 0.58 10.85 7.81 -12.54 -0.10 10.75 16 6 O -0.55 -11.64 14.84 5.27 0.08 -11.56 16 7 N -0.71 -13.41 5.55 -61.40 -0.34 -13.75 16 8 C 0.12 2.68 5.61 -4.05 -0.02 2.66 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 14 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.07 0.95 7.37 -34.97 -0.26 0.69 16 19 C -0.08 -0.91 9.89 36.01 0.36 -0.56 16 20 O -0.18 -2.34 10.52 7.64 0.08 -2.25 16 21 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.16 1.74 7.74 -52.49 -0.41 1.33 16 25 H 0.40 6.61 7.64 -40.82 -0.31 6.30 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.11 1.47 6.48 -51.93 -0.34 1.13 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -32.30 291.08 -5.99 -38.28 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.40 Total: 1.40 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.51 Total: -7.42 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.40 Total: -39.29 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.16 Total: -13.82 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.30 -5.99 -38.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138144.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.063 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds