Wall clock time and date at job start Sun Mar 29 2020 22:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.43747 * 2 1 4 4 C 1.47019 * 105.95198 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19008 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99934 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99915 * 0.02562 * 5 4 3 8 8 C 1.46495 * 119.99858 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47102 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47197 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00259 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00141 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99634 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00256 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47310 * 59.99552 * 14 12 10 16 16 H 1.48495 * 109.47079 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46658 * 299.99680 * 14 12 10 18 18 C 1.36413 * 105.62051 * 359.97438 * 4 3 2 19 19 C 1.50701 * 125.80425 * 180.02562 * 18 4 3 20 20 O 1.33661 * 108.39213 * 359.77210 * 18 4 3 21 21 H 1.09002 * 109.47152 * 90.00216 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00316 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00297 * 1 2 3 24 24 H 1.07998 * 127.02387 * 359.93891 * 3 2 1 25 25 H 0.97002 * 119.99893 * 359.97438 * 7 5 4 26 26 H 1.08998 * 109.47061 * 299.99457 * 8 7 5 27 27 H 1.08998 * 109.47445 * 59.99668 * 8 7 5 28 28 H 1.09001 * 109.47401 * 299.99954 * 9 8 7 29 29 H 1.09004 * 109.46885 * 60.00086 * 9 8 7 30 30 H 0.97002 * 119.99677 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.46794 * 89.99963 * 19 18 4 32 32 H 1.08998 * 109.46574 * 209.99835 * 19 18 4 33 33 H 1.08994 * 109.46424 * 329.99461 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 6.0484 3.5629 -0.0009 9 6 5.6821 5.0483 -0.0019 10 6 6.9413 5.8762 -0.0021 11 1 7.9064 5.3914 -0.0021 12 6 6.8613 7.2528 -0.0024 13 7 5.6861 7.8431 -0.0030 14 14 8.4221 8.2790 -0.0035 15 1 9.2198 7.9657 -1.2162 16 1 8.0665 9.7208 -0.0043 17 1 9.2208 7.9664 1.2088 18 6 3.5791 -0.7582 0.0015 19 6 4.7391 -1.7202 0.0030 20 8 2.2852 -1.0935 0.0065 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.9596 2.1230 -0.0009 25 1 3.9576 3.1935 -0.0005 26 1 6.6347 3.3335 0.8889 27 1 6.6339 3.3328 -0.8910 28 1 5.0960 5.2775 -0.8919 29 1 5.0964 5.2787 0.8881 30 1 5.6299 8.8115 -0.0029 31 1 5.0180 -1.9514 1.0310 32 1 4.4509 -2.6375 -0.5104 33 1 5.5871 -1.2674 -0.5107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138144.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:28 Heat of formation + Delta-G solvation = -67.520375 kcal Electronic energy + Delta-G solvation = -16027.120594 eV Core-core repulsion = 13245.875727 eV Total energy + Delta-G solvation = -2781.244866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.61488 -40.42966 -36.64845 -34.89616 -34.12485 -33.84899 -31.63428 -30.24326 -27.18586 -25.89422 -24.16755 -22.94185 -21.88162 -20.55400 -18.62833 -18.13026 -17.52928 -16.75063 -16.63618 -16.37748 -16.34678 -15.23358 -14.81014 -14.47665 -14.31669 -14.17261 -14.10354 -13.80881 -13.46143 -13.28005 -13.17797 -12.93178 -12.56229 -12.47417 -12.25456 -11.68190 -11.49747 -10.98773 -10.84170 -10.60510 -10.05236 -9.36932 -8.24367 -6.35247 0.29593 1.01440 1.42023 1.44595 1.52549 1.70828 2.27054 2.29916 2.46416 3.10365 3.50038 3.77258 3.83880 4.26483 4.41815 4.46959 4.50580 4.56790 4.60872 4.69652 4.75329 4.82440 4.94350 5.03490 5.20437 5.28728 5.41553 5.48307 5.55668 5.77095 6.03532 6.14714 6.58796 6.77430 7.20199 7.34097 8.87490 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041010 B = 0.004457 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.593905 B = 6280.434214 C = 6931.975667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.011 4.011 3 C -0.201 4.201 4 C -0.267 4.267 5 C 0.579 3.421 6 O -0.582 6.582 7 N -0.711 5.711 8 C 0.142 3.858 9 C 0.023 3.977 10 C -0.549 4.549 11 H 0.060 0.940 12 C 0.008 3.992 13 N -0.927 5.927 14 Si 0.966 3.034 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 C 0.070 3.930 19 C -0.078 4.078 20 O -0.177 6.177 21 H 0.097 0.903 22 H 0.106 0.894 23 H 0.089 0.911 24 H 0.171 0.829 25 H 0.408 0.592 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.266 0.734 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.042 -16.405 0.015 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.220 4.220 4 C -0.271 4.271 5 C 0.369 3.631 6 O -0.465 6.465 7 N -0.361 5.361 8 C 0.018 3.982 9 C -0.014 4.014 10 C -0.587 4.587 11 H 0.078 0.922 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.791 3.209 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.193 1.193 18 C 0.017 3.983 19 C -0.134 4.134 20 O -0.074 6.074 21 H 0.115 0.885 22 H 0.125 0.875 23 H 0.108 0.892 24 H 0.189 0.811 25 H 0.243 0.757 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.483 -16.868 0.017 19.860 hybrid contribution 0.472 1.341 0.002 1.421 sum -10.011 -15.527 0.019 18.475 Atomic orbital electron populations 1.20551 0.81421 1.05638 1.05069 1.23004 0.95588 0.82783 1.04519 1.22861 0.89805 1.00963 1.08350 1.21208 0.94019 0.94054 1.17863 1.17633 0.87869 0.82091 0.75549 1.90685 1.30223 1.72461 1.53139 1.45949 1.10784 1.05581 1.73756 1.21272 0.85648 0.91217 1.00034 1.19131 0.96713 0.89281 0.96310 1.21436 0.93400 0.92070 1.51811 0.92177 1.25881 0.99706 0.99213 0.94290 1.70056 1.25403 1.10298 1.50862 0.85480 0.79089 0.77216 0.79159 1.19307 1.20522 1.19294 1.23117 0.83705 0.94006 0.97510 1.20633 0.90813 0.96912 1.05063 1.83708 1.15839 1.36189 1.71704 0.88451 0.87498 0.89187 0.81110 0.75663 0.93269 0.93276 0.97370 0.97374 0.92502 0.88443 0.87820 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.40 71.24 0.74 -0.05 16 2 C -0.01 -0.23 7.28 24.76 0.18 -0.05 16 3 C -0.20 -5.01 10.48 23.65 0.25 -4.76 16 4 C -0.27 -8.33 6.31 -18.99 -0.12 -8.45 16 5 C 0.58 21.98 7.81 86.65 0.68 22.66 16 6 O -0.58 -25.02 14.84 -4.05 -0.06 -25.08 16 7 N -0.71 -27.18 5.55 -466.43 -2.59 -29.77 16 8 C 0.14 6.36 5.61 86.38 0.48 6.84 16 9 C 0.02 1.19 5.09 29.85 0.15 1.35 16 10 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.01 0.45 5.46 84.66 0.46 0.91 16 13 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 14 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.07 1.90 7.37 25.26 0.19 2.09 16 19 C -0.08 -1.74 9.89 71.24 0.70 -1.03 16 20 O -0.18 -4.29 10.52 4.43 0.05 -4.25 16 21 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.17 3.59 7.74 -2.91 -0.02 3.57 16 25 H 0.41 13.75 7.64 -92.71 -0.71 13.04 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.42 6.48 -2.39 -0.02 2.40 16 Total: -1.00 -69.18 291.08 4.06 -65.11 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.41 Total: 13.93 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 3.95 Total: -11.33 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.30 Total: -84.21 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.01 Total: -29.33 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.18 4.06 -65.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138144.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.407 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds