Wall clock time and date at job start Sun Mar 29 2020 22:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46835 * 2 1 4 4 H 1.08997 * 109.47887 * 54.99627 * 3 2 1 5 5 C 1.50707 * 109.46744 * 174.99732 * 3 2 1 6 6 H 1.08003 * 119.99583 * 119.99764 * 5 3 2 7 7 C 1.37868 * 120.00005 * 299.99829 * 5 3 2 8 8 N 1.31512 * 120.00319 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00116 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46796 * 59.99636 * 9 7 5 11 11 H 1.48497 * 109.47202 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46995 * 300.00046 * 9 7 5 13 13 N 1.46497 * 109.46914 * 294.99143 * 3 2 1 14 14 C 1.34780 * 119.99852 * 85.00878 * 13 3 2 15 15 O 1.21694 * 119.99619 * 359.97438 * 14 13 3 16 16 C 1.46653 * 120.00176 * 179.97438 * 14 13 3 17 17 C 1.36545 * 125.98783 * 179.97438 * 16 14 13 18 18 C 1.40362 * 106.70917 * 180.02562 * 17 16 14 19 19 C 1.35126 * 107.11593 * 0.02562 * 18 17 16 20 20 C 1.50700 * 125.61936 * 180.02562 * 19 18 17 21 21 O 1.33931 * 108.76631 * 359.97438 * 19 18 17 22 22 H 1.08997 * 109.47130 * 300.00612 * 1 2 3 23 23 H 1.08999 * 109.46545 * 60.00435 * 1 2 3 24 24 H 1.08997 * 109.47211 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47130 * 239.99388 * 2 1 3 26 26 H 1.08999 * 109.46545 * 119.99565 * 2 1 3 27 27 H 0.96998 * 120.00144 * 180.02562 * 8 7 5 28 28 H 0.97000 * 120.00532 * 265.00197 * 13 3 2 29 29 H 1.08003 * 126.64563 * 359.75852 * 17 16 14 30 30 H 1.07996 * 126.44143 * 179.97438 * 18 17 16 31 31 H 1.08998 * 109.47131 * 179.97438 * 20 19 18 32 32 H 1.09005 * 109.46477 * 299.97070 * 20 19 18 33 33 H 1.09000 * 109.47245 * 59.96746 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9817 0.8417 5 6 3.5420 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0049 0.8813 1.3820 10 1 6.4994 2.2815 1.3822 11 1 6.3977 0.2179 2.6511 12 1 6.5976 0.1473 0.2351 13 7 1.6526 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3421 2.6318 -0.4314 16 6 0.0475 3.3204 -2.6201 17 6 -1.1484 3.9302 -2.8699 18 6 -1.0862 4.4171 -4.1849 19 6 0.1293 4.0869 -4.6742 20 6 0.6364 4.4098 -6.0561 21 8 0.8096 3.4264 -3.7284 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8292 -0.0602 2.9504 28 1 2.2721 2.1230 -1.9978 29 1 -1.9824 4.0169 -2.1891 30 1 -1.8640 4.9540 -4.7076 31 1 1.6482 4.0214 -6.1718 32 1 -0.0161 3.9508 -6.7989 33 1 0.6437 5.4906 -6.1972 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:05 Heat of formation + Delta-G solvation = -35.166415 kcal Electronic energy + Delta-G solvation = -16743.958681 eV Core-core repulsion = 13964.116788 eV Total energy + Delta-G solvation = -2779.841893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.49022 -38.82455 -35.15092 -33.24005 -32.34491 -31.88166 -30.87007 -27.62517 -26.41023 -23.24594 -22.00240 -21.37881 -20.07118 -19.38247 -18.12457 -16.28842 -16.15134 -15.41999 -15.09379 -14.38768 -14.35670 -13.53741 -13.24269 -13.12481 -12.92044 -12.80969 -12.63529 -12.05692 -11.91845 -11.53258 -11.25258 -11.01153 -10.83138 -10.35817 -10.20343 -9.86486 -9.66916 -9.37399 -9.07760 -8.51535 -8.35113 -7.86168 -6.13008 -4.22633 1.36646 2.49390 2.87028 3.26132 3.31221 3.32709 3.82187 4.03461 4.36955 4.72819 5.04884 5.14058 5.18463 5.28021 5.39955 5.55286 5.83837 5.97294 6.12782 6.38731 6.45279 6.52075 6.64391 7.00625 7.04550 7.20385 7.31532 7.37597 7.60858 7.71903 7.87585 8.15097 8.58676 8.72779 8.99909 9.44097 10.92423 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031101 B = 0.006374 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.076238 B = 4391.585991 C = 5016.108617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.693 5.693 14 C 0.584 3.416 15 O -0.528 6.528 16 C -0.059 4.059 17 C -0.137 4.137 18 C -0.223 4.223 19 C 0.000 4.000 20 C -0.075 4.075 21 O -0.161 6.161 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.025 0.975 25 H 0.032 0.968 26 H 0.101 0.899 27 H 0.266 0.734 28 H 0.393 0.607 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 5.603 -13.340 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.339 5.339 14 C 0.368 3.632 15 O -0.408 6.408 16 C -0.112 4.112 17 C -0.158 4.158 18 C -0.242 4.242 19 C -0.052 4.052 20 C -0.132 4.132 21 O -0.057 6.057 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.226 0.774 29 H 0.175 0.825 30 H 0.169 0.831 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.157 5.326 -12.459 14.498 hybrid contribution 1.040 0.070 -0.262 1.075 sum -4.118 5.396 -12.721 14.419 Atomic orbital electron populations 1.21858 0.98316 0.98256 1.01227 1.21948 0.92657 0.99578 1.02495 1.18905 0.94509 0.89333 0.80543 0.92954 1.21178 0.90512 1.39278 1.06442 0.92040 1.24871 0.98686 0.94706 0.95298 1.69879 1.35270 1.37482 1.09304 0.86493 0.84732 0.78340 0.77459 1.20168 1.21084 1.20135 1.46506 1.13943 1.54534 1.18941 1.16620 0.83517 0.79181 0.83874 1.90847 1.51921 1.60664 1.37344 1.22733 0.92546 1.07846 0.88058 1.21879 0.97807 0.99414 0.96703 1.21495 0.98419 1.08179 0.96143 1.22713 0.92247 0.98090 0.92135 1.20346 1.02572 1.02653 0.87584 1.84040 1.41911 1.59272 1.20473 0.93014 0.94386 0.95629 0.94878 0.88043 0.92445 0.77367 0.82528 0.83130 0.90348 0.89581 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.28 8.73 -34.44 -0.30 -14.58 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.03 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.69 -15.23 5.02 -56.25 -0.28 -15.51 16 14 C 0.58 12.52 6.35 -12.86 -0.08 12.43 16 15 O -0.53 -12.66 14.00 5.19 0.07 -12.59 16 16 C -0.06 -1.07 7.13 -36.80 -0.26 -1.34 16 17 C -0.14 -2.16 10.62 -39.39 -0.42 -2.58 16 18 C -0.22 -2.85 10.77 -39.89 -0.43 -3.28 16 19 C 0.00 0.01 7.31 -35.42 -0.26 -0.25 16 20 C -0.08 -0.60 10.41 36.01 0.37 -0.22 16 21 O -0.16 -2.61 10.40 5.00 0.05 -2.55 16 22 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 23 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.39 7.85 8.30 -40.82 -0.34 7.51 16 29 H 0.16 2.32 8.06 -52.48 -0.42 1.90 16 30 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -30.03 282.57 -5.99 -36.02 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.24 Total: 6.29 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.46 Total: -7.52 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.34 Total: -39.54 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.12 Total: -15.14 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.03 -5.99 -36.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.851 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds