Wall clock time and date at job start Sun Mar 29 2020 22:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21613 * 120.00190 * 0.02562 * 14 13 3 16 16 C 1.47384 * 119.99855 * 179.97438 * 14 13 3 17 17 C 1.47025 * 127.19377 * 359.68987 * 16 14 13 18 18 C 1.34170 * 105.95098 * 179.82760 * 17 16 14 19 19 O 1.34214 * 109.13064 * 0.43664 * 18 17 16 20 20 C 1.33661 * 110.90399 * 359.70500 * 19 18 17 21 21 C 1.50701 * 125.80125 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 28 28 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 29 29 H 1.08004 * 127.02075 * 359.97438 * 17 16 14 30 30 H 1.08008 * 125.43700 * 180.13824 * 18 17 16 31 31 H 1.08997 * 109.46956 * 270.00227 * 21 20 19 32 32 H 1.09004 * 109.46847 * 29.99755 * 21 20 19 33 33 H 1.08996 * 109.46968 * 150.00120 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3417 2.6318 0.4319 16 6 0.0451 3.3228 2.6265 17 6 0.8500 3.4475 3.8506 18 6 0.0888 4.1226 4.7252 19 8 -1.0920 4.4060 4.1536 20 6 -1.1404 3.9387 2.9022 21 6 -2.3063 4.0705 1.9565 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8292 -0.0604 -2.9503 28 1 2.2720 2.1231 1.9978 29 1 1.8506 3.0743 4.0117 30 1 0.3781 4.3906 5.7307 31 1 -2.9690 3.2133 2.0752 32 1 -2.8534 4.9864 2.1797 33 1 -1.9397 4.1070 0.9307 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:20 Heat of formation + Delta-G solvation = -56.012364 kcal Electronic energy + Delta-G solvation = -16910.018908 eV Core-core repulsion = 14129.273067 eV Total energy + Delta-G solvation = -2780.745842 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.45858 -40.41336 -36.94154 -34.42731 -33.91743 -32.85594 -32.42270 -29.12103 -27.67839 -25.26749 -24.05870 -22.32649 -21.19129 -20.83725 -19.14018 -18.03110 -17.29741 -17.14622 -16.60885 -16.10199 -16.00969 -15.27858 -14.61385 -14.41609 -14.08909 -13.85328 -13.80401 -13.65979 -13.44420 -13.17156 -12.89397 -12.66581 -12.61512 -12.17136 -12.05734 -11.59882 -11.05939 -10.75693 -10.73139 -10.52339 -9.68533 -9.41084 -8.16509 -6.33950 0.44185 1.20542 1.44430 1.45115 1.55613 1.92204 2.37058 2.52964 2.73183 3.12908 3.69669 3.98072 3.99251 4.41373 4.49247 4.57396 4.65160 4.70453 4.74829 4.80712 4.95476 5.07072 5.25725 5.27294 5.43308 5.44163 5.55988 5.63117 5.79477 5.92004 6.11997 6.16578 6.73534 7.01177 7.32796 7.57740 8.89077 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.006516 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.967382 B = 4296.046313 C = 4797.087157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.699 5.699 14 C 0.570 3.430 15 O -0.582 6.582 16 C -0.269 4.269 17 C -0.205 4.205 18 C -0.025 4.025 19 O -0.179 6.179 20 C 0.062 3.938 21 C -0.077 4.077 22 H 0.029 0.971 23 H 0.041 0.959 24 H 0.045 0.955 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.266 0.734 28 H 0.400 0.600 29 H 0.171 0.829 30 H 0.255 0.745 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 5.891 13.634 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.018 0.982 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.347 5.347 14 C 0.358 3.642 15 O -0.466 6.466 16 C -0.274 4.274 17 C -0.224 4.224 18 C -0.090 4.090 19 O -0.075 6.075 20 C 0.009 3.991 21 C -0.133 4.133 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.234 0.766 29 H 0.188 0.812 30 H 0.271 0.729 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.264 5.914 12.927 15.534 hybrid contribution 1.463 -0.320 -0.294 1.526 sum -4.801 5.593 12.633 14.626 Atomic orbital electron populations 1.21669 0.96896 0.99135 1.00288 1.21787 0.93881 0.99100 1.01223 1.18389 0.93673 0.89172 0.81130 0.98173 1.21574 0.91423 1.39083 1.06778 0.91267 1.25769 1.03386 0.94301 0.94926 1.70047 1.37081 1.38292 1.09843 0.85365 0.79016 0.78854 0.77220 1.19580 1.21107 1.19028 1.46083 1.15176 1.55831 1.17587 1.17669 0.82013 0.78009 0.86461 1.90686 1.52469 1.61861 1.41554 1.21432 0.97933 1.11268 0.96731 1.23158 1.02372 1.04997 0.91848 1.24670 0.82274 1.01364 1.00696 1.83763 1.36824 1.62838 1.24103 1.23035 0.97061 0.94973 0.84007 1.20569 0.92460 1.04683 0.95631 0.95219 0.94030 0.93558 0.94316 0.90809 0.92528 0.76561 0.81152 0.72948 0.88744 0.87946 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.51 71.98 0.61 -5.05 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.73 2.24 44.24 0.10 14.83 16 4 H 0.00 0.02 7.58 -2.39 -0.02 0.01 16 5 C -0.55 -29.69 8.73 25.60 0.22 -29.47 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -52.67 11.30 21.45 0.24 -52.43 16 9 Si 0.97 42.35 29.54 68.60 2.03 44.37 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 13 N -0.70 -30.70 5.02 -449.42 -2.26 -32.96 16 14 C 0.57 24.35 6.38 86.65 0.55 24.90 16 15 O -0.58 -28.15 11.98 -4.07 -0.05 -28.20 16 16 C -0.27 -9.13 6.31 -18.99 -0.12 -9.25 16 17 C -0.20 -5.20 10.60 23.65 0.25 -4.95 16 18 C -0.03 -0.49 12.03 66.89 0.80 0.31 16 19 O -0.18 -4.36 10.52 4.40 0.05 -4.31 16 20 C 0.06 1.83 7.37 25.26 0.19 2.02 16 21 C -0.08 -1.97 9.89 71.24 0.70 -1.26 16 22 H 0.03 1.45 7.84 -2.39 -0.02 1.44 16 23 H 0.04 1.88 5.64 -2.39 -0.01 1.86 16 24 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.07 4.13 5.95 -2.39 -0.01 4.11 16 27 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.40 15.29 7.71 -92.71 -0.71 14.57 16 29 H 0.17 3.64 7.74 -2.91 -0.02 3.62 16 30 H 0.25 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.66 6.48 -2.39 -0.02 2.64 16 Total: -1.00 -67.91 278.10 4.35 -63.56 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.41 Total: 22.50 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 3.93 Total: -12.53 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.01 Total: -85.39 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: 0.00 Total: -32.51 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -67.91 4.35 -63.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.550 kcal (2) G-P(sol) polarization free energy of solvation -67.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds