Wall clock time and date at job start Sun Mar 29 2020 22:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21696 * 120.00229 * 0.02562 * 14 13 3 16 16 C 1.46657 * 120.00079 * 179.97438 * 14 13 3 17 17 O 1.34915 * 125.98539 * 359.69021 * 16 14 13 18 18 C 1.33932 * 109.38416 * 179.86592 * 17 16 14 19 19 C 1.35135 * 108.76412 * 0.39768 * 18 17 16 20 20 C 1.36548 * 125.99035 * 180.02562 * 16 14 13 21 21 C 1.50698 * 126.64136 * 359.97438 * 20 16 14 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 28 28 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 29 29 H 1.07998 * 125.62212 * 180.12470 * 18 17 16 30 30 H 1.08007 * 126.44007 * 179.75861 * 19 18 17 31 31 H 1.08997 * 109.47103 * 90.00685 * 21 20 16 32 32 H 1.09008 * 109.46862 * 210.00062 * 21 20 16 33 33 H 1.08996 * 109.47625 * 329.99962 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3419 2.6326 -0.4308 16 6 0.0473 3.3206 -2.6198 17 8 0.8117 3.4322 -3.7259 18 6 0.1298 4.0892 -4.6731 19 6 -1.0860 4.4187 -4.1838 20 6 -1.1483 3.9313 -2.8691 21 6 -2.3097 4.0571 -1.9171 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 5.8770 0.4826 2.1132 28 1 2.2718 2.1232 -1.9978 29 1 0.4934 4.3215 -5.6631 30 1 -1.8635 4.9565 -4.7062 31 1 -2.2085 4.9761 -1.3399 32 1 -3.2415 4.0839 -2.4823 33 1 -2.3195 3.2024 -1.2408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:10 Heat of formation + Delta-G solvation = -26.583929 kcal Electronic energy + Delta-G solvation = -17042.860481 eV Core-core repulsion = 14263.390752 eV Total energy + Delta-G solvation = -2779.469729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.55161 -39.04655 -35.51648 -33.92596 -32.41061 -31.66231 -30.14021 -27.92988 -26.97818 -23.21438 -22.42992 -21.32833 -19.98854 -19.58353 -18.09277 -16.55354 -16.24759 -15.71626 -15.57833 -14.67999 -14.25442 -13.68358 -13.41264 -13.06184 -12.93897 -12.86521 -12.43172 -12.35560 -11.95026 -11.79126 -11.64802 -11.10533 -10.93078 -10.64613 -9.94214 -9.69396 -9.61169 -9.33806 -9.24407 -8.77801 -8.51447 -8.08354 -6.21610 -4.24540 1.30047 2.43439 2.93487 3.22971 3.35041 3.39549 3.65482 3.92441 4.30749 4.81510 4.86869 5.11554 5.23155 5.50932 5.62642 5.83364 5.89195 5.94864 6.01192 6.10691 6.15812 6.25560 6.52022 6.63706 6.67608 6.80089 6.91061 7.00159 7.23408 7.26880 7.46778 8.11539 8.47458 8.71147 8.82800 9.38232 10.90428 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.007060 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.653012 B = 3964.840835 C = 4399.911160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.242 3.758 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.687 5.687 14 C 0.588 3.412 15 O -0.528 6.528 16 C -0.068 4.068 17 O -0.161 6.161 18 C -0.017 4.017 19 C -0.226 4.226 20 C -0.104 4.104 21 C -0.091 4.091 22 H 0.054 0.946 23 H 0.033 0.967 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.268 0.732 28 H 0.400 0.600 29 H 0.206 0.794 30 H 0.151 0.849 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 4.354 -9.956 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.333 5.333 14 C 0.373 3.627 15 O -0.408 6.408 16 C -0.120 4.120 17 O -0.056 6.056 18 C -0.087 4.087 19 C -0.245 4.245 20 C -0.107 4.107 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.234 0.766 29 H 0.223 0.777 30 H 0.169 0.831 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.840 4.134 -9.149 15.523 hybrid contribution -0.157 -0.317 0.085 0.364 sum -11.996 3.816 -9.064 15.512 Atomic orbital electron populations 1.21891 0.96898 0.99224 1.02243 1.22297 0.94418 0.99780 1.01303 1.19243 0.95895 0.88603 0.82400 0.92978 1.21036 0.88461 1.39955 1.07990 0.90104 1.24827 0.94891 0.95102 0.97643 1.69866 1.08693 1.44397 1.29811 0.86904 0.80985 0.79975 0.80892 1.20183 1.22102 1.18380 1.46158 1.14198 1.54641 1.18352 1.16585 0.83210 0.78890 0.84031 1.90807 1.51730 1.60860 1.37377 1.22386 0.92339 1.08756 0.88560 1.84100 1.41418 1.59498 1.20613 1.24268 0.92276 0.97924 0.94214 1.21680 0.99239 1.07819 0.95765 1.20587 0.95761 0.98740 0.95633 1.20374 0.93152 1.03936 0.97296 0.92724 0.94797 0.93012 0.92572 0.92161 0.92242 0.76620 0.77736 0.83087 0.91125 0.92028 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.14 -3.11 5.11 -26.73 -0.14 -3.24 16 3 C 0.24 5.77 1.83 -69.08 -0.13 5.64 16 4 H 0.05 1.35 6.63 -51.93 -0.34 1.01 16 5 C -0.54 -14.59 9.31 -34.44 -0.32 -14.91 16 6 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 9 Si 0.88 21.64 24.41 -169.99 -4.15 17.50 16 10 H -0.27 -6.53 6.83 56.52 0.39 -6.14 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.69 -14.27 5.02 -56.25 -0.28 -14.56 16 14 C 0.59 11.68 6.35 -12.86 -0.08 11.60 16 15 O -0.53 -11.38 11.87 5.19 0.06 -11.32 16 16 C -0.07 -1.16 7.13 -36.80 -0.26 -1.42 16 17 O -0.16 -2.42 10.40 4.99 0.05 -2.37 16 18 C -0.02 -0.19 12.08 29.63 0.36 0.17 16 19 C -0.23 -2.65 10.83 -39.89 -0.43 -3.08 16 20 C -0.10 -1.55 6.20 -104.44 -0.65 -2.19 16 21 C -0.09 -1.22 9.81 36.00 0.35 -0.87 16 22 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 1.03 5.65 -51.93 -0.29 0.73 16 25 H 0.06 1.31 3.22 -51.93 -0.17 1.14 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.40 7.70 8.30 -40.82 -0.34 7.36 16 29 H 0.21 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.09 1.36 6.45 -51.93 -0.33 1.02 16 LS Contribution 271.79 15.07 4.10 4.10 Total: -1.00 -30.77 271.79 -4.55 -35.32 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.02 Total: 5.78 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.08 Total: -8.79 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.49 Total: -40.21 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.11 Total: -13.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.15 Total: 17.50 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.77 -4.55 -35.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.736 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds