Wall clock time and date at job start Sun Mar 29 2020 22:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21696 * 120.00229 * 0.02562 * 14 13 3 16 16 C 1.46657 * 120.00079 * 179.97438 * 14 13 3 17 17 O 1.34915 * 125.98539 * 359.69021 * 16 14 13 18 18 C 1.33932 * 109.38416 * 179.86592 * 17 16 14 19 19 C 1.35135 * 108.76412 * 0.39768 * 18 17 16 20 20 C 1.36548 * 125.99035 * 180.02562 * 16 14 13 21 21 C 1.50698 * 126.64136 * 359.97438 * 20 16 14 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 28 28 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 29 29 H 1.07998 * 125.62212 * 180.12470 * 18 17 16 30 30 H 1.08007 * 126.44007 * 179.75861 * 19 18 17 31 31 H 1.08997 * 109.47103 * 90.00685 * 21 20 16 32 32 H 1.09008 * 109.46862 * 210.00062 * 21 20 16 33 33 H 1.08996 * 109.47625 * 329.99962 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3419 2.6326 -0.4308 16 6 0.0473 3.3206 -2.6198 17 8 0.8117 3.4322 -3.7259 18 6 0.1298 4.0892 -4.6731 19 6 -1.0860 4.4187 -4.1838 20 6 -1.1483 3.9313 -2.8691 21 6 -2.3097 4.0571 -1.9171 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 5.8770 0.4826 2.1132 28 1 2.2718 2.1232 -1.9978 29 1 0.4934 4.3215 -5.6631 30 1 -1.8635 4.9565 -4.7062 31 1 -2.2085 4.9761 -1.3399 32 1 -3.2415 4.0839 -2.4823 33 1 -2.3195 3.2024 -1.2408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:09 Heat of formation + Delta-G solvation = -48.517398 kcal Electronic energy + Delta-G solvation = -17043.811588 eV Core-core repulsion = 14263.390752 eV Total energy + Delta-G solvation = -2780.420835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.62171 -40.63590 -37.25281 -35.08385 -34.37977 -33.37585 -31.23289 -29.61185 -28.35528 -24.91002 -23.94400 -22.52299 -21.54533 -21.04985 -19.55069 -18.31425 -17.61332 -17.30062 -16.88382 -16.26584 -15.97464 -15.16645 -15.01547 -14.60601 -14.13699 -13.97297 -13.86030 -13.74143 -13.63930 -13.46166 -12.98184 -12.80514 -12.69767 -12.41633 -11.87176 -11.42648 -11.28118 -10.97784 -10.87225 -10.61828 -9.95631 -9.48875 -8.39724 -6.46457 0.11934 1.27190 1.35079 1.45326 1.47111 1.83293 2.21306 2.25264 2.47775 2.95648 3.82000 3.88666 4.01003 4.20911 4.29815 4.43094 4.58655 4.66579 4.76428 4.80185 4.85191 4.97972 5.08461 5.14493 5.19444 5.26161 5.35179 5.48555 5.50651 5.58968 5.93334 6.14500 6.53996 6.76651 7.12495 7.28237 8.75654 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.007060 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.653012 B = 3964.840835 C = 4399.911160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.030 0.970 5 C -0.538 4.538 6 H 0.052 0.948 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.938 3.062 10 H -0.257 1.257 11 H -0.291 1.291 12 H -0.257 1.257 13 N -0.693 5.693 14 C 0.588 3.412 15 O -0.553 6.553 16 C -0.117 4.117 17 O -0.178 6.178 18 C 0.006 3.994 19 C -0.231 4.231 20 C -0.097 4.097 21 C -0.092 4.092 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.271 0.729 28 H 0.405 0.595 29 H 0.255 0.745 30 H 0.187 0.813 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.866 4.604 -11.608 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.047 0.953 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.765 3.235 10 H -0.183 1.183 11 H -0.219 1.219 12 H -0.181 1.181 13 N -0.341 5.341 14 C 0.376 3.624 15 O -0.434 6.434 16 C -0.168 4.168 17 O -0.074 6.074 18 C -0.063 4.063 19 C -0.250 4.250 20 C -0.100 4.100 21 C -0.148 4.148 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.239 0.761 29 H 0.271 0.729 30 H 0.205 0.795 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.925 4.387 -10.824 18.174 hybrid contribution 0.472 -0.255 0.418 0.680 sum -13.453 4.132 -10.406 17.503 Atomic orbital electron populations 1.21772 0.94998 1.00820 1.01615 1.22213 0.96054 0.98163 1.01191 1.18891 0.93430 0.89868 0.83248 0.95265 1.21258 0.90249 1.39002 1.07144 0.92978 1.25578 0.95844 0.95718 0.99867 1.69978 1.10368 1.45946 1.30894 0.86002 0.79378 0.80015 0.78111 1.18315 1.21851 1.18097 1.45995 1.15151 1.55447 1.17458 1.16887 0.82236 0.78160 0.85096 1.90776 1.52156 1.61743 1.38775 1.21813 0.93899 1.12363 0.88741 1.84082 1.42008 1.60466 1.20797 1.25374 0.91695 0.94511 0.94695 1.22083 1.00500 1.08056 0.94340 1.21018 0.94886 0.96977 0.97120 1.20412 0.94263 1.02941 0.97224 0.93856 0.91974 0.93178 0.93324 0.91518 0.91960 0.76070 0.72880 0.79532 0.90786 0.88886 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.51 71.98 0.61 -4.65 16 2 C -0.14 -6.06 5.11 30.59 0.16 -5.91 16 3 C 0.25 12.16 1.83 44.24 0.08 12.24 16 4 H 0.03 1.56 6.63 -2.38 -0.02 1.55 16 5 C -0.54 -30.20 9.31 25.60 0.24 -29.96 16 6 H 0.05 3.14 7.98 -2.91 -0.02 3.12 16 7 C 0.03 1.71 5.45 84.66 0.46 2.17 16 8 N -0.93 -56.68 13.96 21.45 0.30 -56.38 16 9 Si 0.94 44.89 24.41 68.60 1.67 46.57 16 10 H -0.26 -11.54 6.83 99.48 0.68 -10.86 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.26 -12.08 6.53 99.48 0.65 -11.43 16 13 N -0.69 -29.52 5.02 -450.08 -2.26 -31.78 16 14 C 0.59 23.73 6.35 86.44 0.55 24.28 16 15 O -0.55 -24.28 11.87 -4.34 -0.05 -24.33 16 16 C -0.12 -3.89 7.13 24.07 0.17 -3.72 16 17 O -0.18 -5.05 10.40 -5.06 -0.05 -5.11 16 18 C 0.01 0.12 12.08 67.10 0.81 0.93 16 19 C -0.23 -4.50 10.83 22.07 0.24 -4.26 16 20 C -0.10 -2.68 6.20 -19.74 -0.12 -2.80 16 21 C -0.09 -2.31 9.81 71.24 0.70 -1.61 16 22 H 0.04 1.77 7.84 -2.39 -0.02 1.75 16 23 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.96 5.65 -2.38 -0.01 1.94 16 25 H 0.05 2.20 3.22 -2.39 -0.01 2.20 16 26 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 28 H 0.40 16.12 8.30 -92.71 -0.77 15.35 16 29 H 0.26 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.19 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.95 6.45 -2.39 -0.02 1.93 16 Total: -1.00 -68.61 271.79 3.79 -64.82 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.28 Total: 19.50 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.90 Total: -13.30 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -1.96 Total: -88.16 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.10 Total: -29.43 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.67 Total: 46.57 kcal Total: -68.61 3.79 -64.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.303 kcal (2) G-P(sol) polarization free energy of solvation -68.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds