Wall clock time and date at job start Sun Mar 29 2020 22:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47362 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69659 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69234 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37875 * 119.99767 * 95.00472 * 5 3 2 8 8 N 1.31517 * 120.00099 * 184.83388 * 7 5 3 9 9 Si 1.86799 * 120.00387 * 4.83204 * 7 5 3 10 10 H 1.48506 * 109.47042 * 84.85937 * 9 7 5 11 11 H 1.48496 * 109.47581 * 204.86203 * 9 7 5 12 12 H 1.48501 * 109.47304 * 324.86516 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69527 * 3 2 1 14 14 C 1.34782 * 120.00207 * 274.99523 * 13 3 2 15 15 O 1.21695 * 119.99473 * 0.02562 * 14 13 3 16 16 C 1.46650 * 120.00211 * 179.97438 * 14 13 3 17 17 O 1.34917 * 125.98534 * 359.69955 * 16 14 13 18 18 C 1.33938 * 109.37914 * 179.88401 * 17 16 14 19 19 C 1.35127 * 108.76857 * 0.37497 * 18 17 16 20 20 C 1.36543 * 125.99002 * 180.02562 * 16 14 13 21 21 C 1.50706 * 126.64314 * 359.97438 * 20 16 14 22 22 H 1.08998 * 109.46636 * 299.99600 * 1 2 3 23 23 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47148 * 59.99265 * 1 2 3 25 25 H 1.09001 * 109.47148 * 120.00735 * 2 1 3 26 26 H 1.09008 * 109.46588 * 240.00421 * 2 1 3 27 27 H 0.97001 * 120.00522 * 180.02562 * 8 7 5 28 28 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 29 29 H 1.08001 * 125.61180 * 180.12761 * 18 17 16 30 30 H 1.07999 * 126.43948 * 179.76781 * 19 18 17 31 31 H 1.09004 * 109.46394 * 90.00440 * 21 20 16 32 32 H 1.08997 * 109.47064 * 209.99818 * 21 20 16 33 33 H 1.08996 * 109.47450 * 330.00704 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4448 -0.1409 6 1 4.1652 1.3332 0.7330 7 6 4.1157 1.5893 -1.3856 8 7 5.4205 1.4963 -1.5218 9 14 3.0419 1.9171 -2.8785 10 1 2.7755 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1029 12 1 1.7562 1.1884 -2.7332 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3369 2.6301 0.4632 16 6 0.0772 3.3089 2.6505 17 8 0.8496 3.4048 3.7525 18 6 0.1817 4.0656 4.7072 19 6 -1.0390 4.3983 4.2328 20 6 -1.1157 3.9176 2.9164 21 6 -2.2878 4.0482 1.9780 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 5.8253 1.5984 -2.3974 28 1 2.2949 2.1149 1.9978 29 1 0.5557 4.2913 5.6949 30 1 -1.8106 4.9332 4.7665 31 1 -2.9474 3.1889 2.0990 32 1 -2.8360 4.9621 2.2064 33 1 -1.9276 4.0877 0.9500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:12 Heat of formation + Delta-G solvation = -35.434872 kcal Electronic energy + Delta-G solvation = -17028.845558 eV Core-core repulsion = 14248.992024 eV Total energy + Delta-G solvation = -2779.853535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.52230 -38.97968 -35.38594 -33.87998 -32.37541 -31.62775 -30.09627 -27.93140 -26.94732 -23.21520 -22.44442 -21.22574 -19.75825 -19.57294 -18.06320 -16.67868 -16.21094 -15.65893 -15.52201 -14.51805 -14.22732 -13.66241 -13.34816 -12.94332 -12.91454 -12.76998 -12.41607 -12.32277 -11.93022 -11.84013 -11.63237 -10.96112 -10.71611 -10.69023 -10.03940 -9.85656 -9.61846 -9.41158 -9.22374 -8.72236 -8.49824 -8.01933 -6.24870 -4.28988 1.33252 2.45851 2.96552 3.25657 3.33512 3.40323 3.70098 3.96932 4.31267 4.83546 4.89329 5.09336 5.31293 5.53052 5.65146 5.84690 5.92179 6.04242 6.07649 6.13390 6.22241 6.28638 6.54740 6.62004 6.76524 6.92489 6.96523 7.03365 7.27477 7.33313 7.49886 8.10267 8.51270 8.74247 8.84582 9.36392 10.86712 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.007317 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.509853 B = 3825.899487 C = 4097.196538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.053 0.947 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.258 1.258 13 N -0.689 5.689 14 C 0.585 3.415 15 O -0.531 6.531 16 C -0.067 4.067 17 O -0.161 6.161 18 C -0.018 4.018 19 C -0.226 4.226 20 C -0.106 4.106 21 C -0.091 4.091 22 H 0.049 0.951 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.268 0.732 28 H 0.398 0.602 29 H 0.206 0.794 30 H 0.151 0.849 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 3.854 9.911 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.134 3.866 4 H 0.071 0.929 5 C -0.570 4.570 6 H 0.098 0.902 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.182 1.182 13 N -0.336 5.336 14 C 0.370 3.630 15 O -0.411 6.411 16 C -0.119 4.119 17 O -0.056 6.056 18 C -0.088 4.088 19 C -0.245 4.245 20 C -0.109 4.109 21 C -0.147 4.147 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.232 0.768 29 H 0.222 0.778 30 H 0.169 0.831 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.382 3.677 9.081 15.018 hybrid contribution -0.200 0.366 -0.163 0.448 sum -11.582 4.043 8.918 15.166 Atomic orbital electron populations 1.21919 0.97376 0.99018 1.02037 1.22082 0.93714 0.99236 1.01427 1.19260 0.95753 0.89228 0.82361 0.92870 1.21000 0.88543 1.51873 0.95575 0.90247 1.24936 0.94902 0.93609 0.98797 1.69881 1.09763 1.48117 1.24544 0.86913 0.81314 0.79695 0.82195 1.19808 1.21129 1.18232 1.46637 1.13828 1.54533 1.18598 1.16680 0.83421 0.79019 0.83918 1.90797 1.51278 1.60647 1.38421 1.22458 0.92091 1.08829 0.88549 1.84102 1.41791 1.59230 1.20493 1.24257 0.92530 0.97903 0.94123 1.21671 0.99003 1.07982 0.95826 1.20589 0.95752 0.99111 0.95479 1.20368 0.93921 1.01261 0.99162 0.93216 0.94943 0.92976 0.92889 0.91853 0.92186 0.76815 0.77774 0.83128 0.91226 0.92044 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.53 37.16 0.32 -2.59 16 2 C -0.13 -2.73 5.59 -26.73 -0.15 -2.88 16 3 C 0.24 5.60 1.89 -69.09 -0.13 5.47 16 4 H 0.05 1.36 4.73 -51.93 -0.25 1.12 16 5 C -0.53 -14.32 9.05 -34.44 -0.31 -14.63 16 6 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 8 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 9 Si 0.87 21.41 26.99 -169.99 -4.59 16.83 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.26 -6.19 6.82 56.52 0.39 -5.80 16 13 N -0.69 -14.47 5.02 -56.25 -0.28 -14.75 16 14 C 0.58 11.82 6.39 -12.86 -0.08 11.74 16 15 O -0.53 -11.64 11.87 5.19 0.06 -11.58 16 16 C -0.07 -1.16 7.13 -36.80 -0.26 -1.42 16 17 O -0.16 -2.47 10.40 4.97 0.05 -2.42 16 18 C -0.02 -0.21 12.08 29.63 0.36 0.15 16 19 C -0.23 -2.71 10.83 -39.89 -0.43 -3.15 16 20 C -0.11 -1.61 6.20 -104.43 -0.65 -2.26 16 21 C -0.09 -1.24 9.82 36.01 0.35 -0.89 16 22 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.41 8.14 -51.92 -0.42 0.98 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.40 7.75 8.35 -40.82 -0.34 7.41 16 29 H 0.21 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.40 6.45 -51.93 -0.33 1.07 16 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -30.53 278.46 -5.03 -35.56 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.16 Total: 5.72 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.08 Total: -8.27 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.49 Total: -40.04 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.11 Total: -13.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.59 Total: 16.83 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.53 -5.03 -35.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.127 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds