Wall clock time and date at job start Sun Mar 29 2020 22:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47362 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69659 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69234 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37875 * 119.99767 * 95.00472 * 5 3 2 8 8 N 1.31517 * 120.00099 * 184.83388 * 7 5 3 9 9 Si 1.86799 * 120.00387 * 4.83204 * 7 5 3 10 10 H 1.48506 * 109.47042 * 84.85937 * 9 7 5 11 11 H 1.48496 * 109.47581 * 204.86203 * 9 7 5 12 12 H 1.48501 * 109.47304 * 324.86516 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69527 * 3 2 1 14 14 C 1.34782 * 120.00207 * 274.99523 * 13 3 2 15 15 O 1.21695 * 119.99473 * 0.02562 * 14 13 3 16 16 C 1.46650 * 120.00211 * 179.97438 * 14 13 3 17 17 O 1.34917 * 125.98534 * 359.69955 * 16 14 13 18 18 C 1.33938 * 109.37914 * 179.88401 * 17 16 14 19 19 C 1.35127 * 108.76857 * 0.37497 * 18 17 16 20 20 C 1.36543 * 125.99002 * 180.02562 * 16 14 13 21 21 C 1.50706 * 126.64314 * 359.97438 * 20 16 14 22 22 H 1.08998 * 109.46636 * 299.99600 * 1 2 3 23 23 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47148 * 59.99265 * 1 2 3 25 25 H 1.09001 * 109.47148 * 120.00735 * 2 1 3 26 26 H 1.09008 * 109.46588 * 240.00421 * 2 1 3 27 27 H 0.97001 * 120.00522 * 180.02562 * 8 7 5 28 28 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 29 29 H 1.08001 * 125.61180 * 180.12761 * 18 17 16 30 30 H 1.07999 * 126.43948 * 179.76781 * 19 18 17 31 31 H 1.09004 * 109.46394 * 90.00440 * 21 20 16 32 32 H 1.08997 * 109.47064 * 209.99818 * 21 20 16 33 33 H 1.08996 * 109.47450 * 330.00704 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4448 -0.1409 6 1 4.1652 1.3332 0.7330 7 6 4.1157 1.5893 -1.3856 8 7 5.4205 1.4963 -1.5218 9 14 3.0419 1.9171 -2.8785 10 1 2.7755 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1029 12 1 1.7562 1.1884 -2.7332 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3369 2.6301 0.4632 16 6 0.0772 3.3089 2.6505 17 8 0.8496 3.4048 3.7525 18 6 0.1817 4.0656 4.7072 19 6 -1.0390 4.3983 4.2328 20 6 -1.1157 3.9176 2.9164 21 6 -2.2878 4.0482 1.9780 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 5.8253 1.5984 -2.3974 28 1 2.2949 2.1149 1.9978 29 1 0.5557 4.2913 5.6949 30 1 -1.8106 4.9332 4.7665 31 1 -2.9474 3.1889 2.0990 32 1 -2.8360 4.9621 2.2064 33 1 -1.9276 4.0877 0.9500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:12 Heat of formation + Delta-G solvation = -56.390053 kcal Electronic energy + Delta-G solvation = -17029.754243 eV Core-core repulsion = 14248.992024 eV Total energy + Delta-G solvation = -2780.762219 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.61265 -40.58331 -37.11556 -35.05868 -34.37927 -33.29148 -31.21297 -29.62034 -28.33135 -24.95570 -23.87780 -22.39203 -21.38931 -21.04746 -19.58074 -18.43146 -17.50544 -17.24143 -16.86972 -16.12177 -15.97081 -15.17101 -14.79451 -14.60290 -14.06146 -13.95052 -13.82618 -13.79289 -13.67671 -13.46180 -12.94273 -12.73474 -12.58019 -12.37559 -11.88325 -11.71827 -11.25058 -10.98409 -10.84824 -10.61847 -9.90626 -9.46285 -8.40865 -6.47766 0.13174 1.28916 1.32972 1.43971 1.47542 1.84854 2.23464 2.25832 2.48530 3.01657 3.83632 3.89849 4.02616 4.28953 4.39710 4.51437 4.59099 4.66337 4.76847 4.80034 4.85059 5.08655 5.14540 5.18325 5.23873 5.29024 5.36901 5.51691 5.53631 5.69384 5.93562 6.14060 6.56380 6.80311 7.15557 7.29125 8.74214 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.007317 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.509853 B = 3825.899487 C = 4097.196538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.242 3.758 4 H 0.036 0.964 5 C -0.531 4.531 6 H 0.053 0.947 7 C 0.034 3.966 8 N -0.929 5.929 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.251 1.251 13 N -0.696 5.696 14 C 0.585 3.415 15 O -0.556 6.556 16 C -0.116 4.116 17 O -0.177 6.177 18 C 0.005 3.995 19 C -0.231 4.231 20 C -0.099 4.099 21 C -0.091 4.091 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.271 0.729 28 H 0.403 0.597 29 H 0.255 0.745 30 H 0.187 0.813 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.356 4.589 11.572 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C 0.139 3.861 4 H 0.054 0.946 5 C -0.569 4.569 6 H 0.071 0.929 7 C -0.167 4.167 8 N -0.567 5.567 9 Si 0.750 3.250 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.174 1.174 13 N -0.343 5.343 14 C 0.373 3.627 15 O -0.438 6.438 16 C -0.168 4.168 17 O -0.073 6.073 18 C -0.064 4.064 19 C -0.250 4.250 20 C -0.102 4.102 21 C -0.148 4.148 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.238 0.762 29 H 0.271 0.729 30 H 0.204 0.796 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.416 4.412 10.758 17.754 hybrid contribution 0.391 0.211 -0.472 0.648 sum -13.026 4.623 10.286 17.229 Atomic orbital electron populations 1.21780 0.95638 1.00541 1.01206 1.21995 0.95184 0.97659 1.01420 1.19009 0.93453 0.90491 0.83168 0.94610 1.21188 0.90202 1.50878 0.94646 0.92898 1.25621 0.95859 0.93727 1.01454 1.69980 1.11299 1.50029 1.25390 0.86056 0.80110 0.79357 0.79445 1.20019 1.20070 1.17435 1.46382 1.14788 1.55356 1.17793 1.16949 0.82463 0.78299 0.84995 1.90767 1.51706 1.61521 1.39809 1.21874 0.93751 1.12423 0.88715 1.84083 1.42345 1.60211 1.20682 1.25367 0.91971 0.94480 0.94564 1.22074 1.00238 1.08221 0.94435 1.21022 0.94923 0.97289 0.96999 1.20401 0.93856 1.03094 0.97413 0.93604 0.92147 0.94229 0.92205 0.92534 0.91932 0.76246 0.72892 0.79564 0.90474 0.89052 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.53 71.98 0.61 -4.61 16 2 C -0.12 -5.34 5.59 30.59 0.17 -5.17 16 3 C 0.24 11.66 1.89 44.24 0.08 11.74 16 4 H 0.04 1.86 4.73 -2.39 -0.01 1.85 16 5 C -0.53 -29.36 9.05 25.60 0.23 -29.13 16 6 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 7 C 0.03 1.94 5.47 84.65 0.46 2.40 16 8 N -0.93 -55.87 13.96 21.45 0.30 -55.57 16 9 Si 0.93 44.74 26.99 68.60 1.85 46.59 16 10 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.25 -11.69 6.82 99.48 0.68 -11.02 16 13 N -0.70 -29.75 5.02 -450.10 -2.26 -32.01 16 14 C 0.59 23.87 6.39 86.44 0.55 24.42 16 15 O -0.56 -24.68 11.87 -4.33 -0.05 -24.73 16 16 C -0.12 -3.93 7.13 24.07 0.17 -3.76 16 17 O -0.18 -5.12 10.40 -5.14 -0.05 -5.17 16 18 C 0.01 0.10 12.08 67.10 0.81 0.91 16 19 C -0.23 -4.60 10.83 22.07 0.24 -4.37 16 20 C -0.10 -2.80 6.20 -19.74 -0.12 -2.92 16 21 C -0.09 -2.34 9.82 71.24 0.70 -1.64 16 22 H 0.04 1.80 5.63 -2.39 -0.01 1.79 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.04 1.62 7.88 -2.39 -0.02 1.60 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 27 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.40 16.13 8.35 -92.71 -0.77 15.35 16 29 H 0.26 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.93 6.45 -2.39 -0.02 1.92 16 Total: -1.00 -67.84 278.46 4.02 -63.82 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.32 Total: 19.20 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 3.91 Total: -12.12 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -1.96 Total: -87.58 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.10 Total: -29.90 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.85 Total: 46.59 kcal Total: -67.84 4.02 -63.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.429 kcal (2) G-P(sol) polarization free energy of solvation -67.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds