Wall clock time and date at job start Sun Mar 29 2020 22:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47283 * 2 1 4 4 O 1.21282 * 119.99548 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99759 * 180.02562 * 3 2 1 6 6 C 1.46493 * 120.00646 * 0.02562 * 5 3 2 7 7 C 1.50695 * 109.47443 * 270.00265 * 6 5 3 8 8 H 1.08001 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00480 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99528 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00487 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46798 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47215 * 119.99681 * 11 9 7 14 14 H 1.48502 * 109.47219 * 239.99952 * 11 9 7 15 15 C 1.46505 * 119.99455 * 180.02562 * 5 3 2 16 16 C 1.50703 * 109.47064 * 90.00114 * 15 5 3 17 17 C 1.34515 * 125.79060 * 89.99944 * 16 15 5 18 18 C 1.41380 * 106.83832 * 179.97438 * 17 16 15 19 19 C 1.34506 * 106.84493 * 359.97438 * 18 17 16 20 20 O 1.34306 * 125.78568 * 269.69282 * 16 15 5 21 21 H 1.09002 * 109.47244 * 59.99807 * 1 2 3 22 22 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46715 * 299.99592 * 1 2 3 24 24 H 1.09006 * 109.47088 * 240.00554 * 2 1 3 25 25 H 1.08999 * 109.47644 * 120.00835 * 2 1 3 26 26 H 1.09006 * 109.46911 * 30.00087 * 6 5 3 27 27 H 1.08996 * 109.47170 * 149.99599 * 6 5 3 28 28 H 0.97003 * 119.99687 * 180.02562 * 10 9 7 29 29 H 1.09002 * 109.47068 * 210.00083 * 15 5 3 30 30 H 1.09001 * 109.47372 * 330.00170 * 15 5 3 31 31 H 1.07996 * 126.58016 * 0.03378 * 17 16 15 32 32 H 1.08006 * 126.57610 * 179.97438 * 18 17 16 33 33 H 1.08005 * 125.79499 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3094 0.5536 -0.0017 7 6 4.6366 0.1709 1.4187 8 1 4.1812 0.7040 2.2402 9 6 5.5172 -0.8599 1.6696 10 7 6.0713 -1.5095 0.6693 11 14 5.9233 -1.3339 3.4302 12 1 5.1735 -0.4563 4.3645 13 1 5.5373 -2.7487 3.6636 14 1 7.3813 -1.1738 3.6623 15 6 3.8457 3.0483 0.0000 16 6 4.0139 3.5211 1.4211 17 6 5.1304 3.4041 2.1621 18 6 4.8469 3.9772 3.4231 19 6 3.5744 4.4105 3.3771 20 8 3.0762 4.1358 2.1604 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.8688 -0.3006 -0.5158 27 1 5.2216 0.8561 -0.5158 28 1 6.6906 -2.2350 0.8458 29 1 4.8057 3.0945 -0.5143 30 1 3.1275 3.6878 -0.5130 31 1 6.0645 2.9589 1.8528 32 1 5.5225 4.0526 4.2624 33 1 3.0443 4.8999 4.1808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060625871.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:24 Heat of formation + Delta-G solvation = -28.711622 kcal Electronic energy + Delta-G solvation = -17248.298299 eV Core-core repulsion = 14468.736306 eV Total energy + Delta-G solvation = -2779.561993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.94453 -39.03657 -35.19170 -32.81716 -32.34521 -32.15463 -30.02938 -27.32739 -25.75962 -23.41307 -22.57542 -21.13189 -20.02758 -18.25140 -16.99083 -16.57792 -16.31494 -15.52422 -14.93968 -14.84006 -14.38226 -14.01623 -13.17935 -12.72824 -12.36310 -12.23884 -12.17016 -12.09756 -11.79647 -11.54736 -11.19160 -11.13818 -10.93620 -10.72515 -10.54023 -10.19174 -9.75932 -9.28901 -9.08053 -8.56733 -8.01441 -7.73267 -6.18153 -4.23250 2.25117 3.14777 3.21391 3.30544 3.35103 3.38792 3.68497 4.07173 4.35812 5.15429 5.24606 5.33089 5.55596 5.58650 5.69536 5.71072 5.84641 5.98309 6.18936 6.31949 6.35607 6.52308 6.54955 6.61155 6.64535 6.74361 7.08838 7.15155 7.48301 7.74332 7.78454 8.06270 8.29042 8.82190 9.01588 9.44331 10.88986 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.012258 C = 0.008202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.931829 B = 2283.615067 C = 3412.953432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.139 4.139 3 C 0.517 3.483 4 O -0.569 6.569 5 N -0.596 5.596 6 C 0.236 3.764 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.065 3.935 10 N -0.893 5.893 11 Si 0.891 3.109 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.200 3.800 16 C -0.016 4.016 17 C -0.180 4.180 18 C -0.217 4.217 19 C -0.057 4.057 20 O -0.170 6.170 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.264 0.736 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 5.783 0.631 6.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.178 4.178 3 C 0.306 3.694 4 O -0.449 6.449 5 N -0.327 5.327 6 C 0.116 3.884 7 C -0.566 4.566 8 H 0.081 0.919 9 C -0.137 4.137 10 N -0.532 5.532 11 Si 0.719 3.281 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.076 3.924 16 C -0.067 4.067 17 C -0.200 4.200 18 C -0.236 4.236 19 C -0.126 4.126 20 O -0.066 6.066 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.624 6.157 0.457 7.159 hybrid contribution 0.800 -0.563 1.407 1.714 sum -2.823 5.593 1.864 6.537 Atomic orbital electron populations 1.21519 0.94384 1.00645 1.02457 1.21574 0.96665 0.94472 1.05136 1.20709 0.81995 0.91585 0.75097 1.90598 1.55597 1.46839 1.51908 1.48361 1.06655 1.06637 1.71062 1.19520 0.87599 0.83438 0.97817 1.21526 1.26171 1.16622 0.92279 0.91892 1.24902 0.95693 0.95953 0.97186 1.69930 1.30107 1.22572 1.30609 0.86527 0.78232 0.78362 0.84969 1.19628 1.20937 1.20917 1.19624 1.01119 0.84180 0.87503 1.22950 0.87396 1.00171 0.96218 1.21567 1.00303 1.04373 0.93804 1.21774 0.97004 1.05464 0.99360 1.23849 0.95181 1.06186 0.87358 1.84062 1.40187 1.59986 1.22343 0.92707 0.92753 0.92568 0.89350 0.87947 0.94010 0.94602 0.92680 0.87942 0.89586 0.83380 0.84204 0.79027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.20 37.16 0.34 -1.77 16 2 C -0.14 -2.55 4.97 -27.88 -0.14 -2.69 16 3 C 0.52 10.96 7.67 -10.98 -0.08 10.87 16 4 O -0.57 -13.15 15.56 5.56 0.09 -13.06 16 5 N -0.60 -12.53 2.44 -176.43 -0.43 -12.96 16 6 C 0.24 5.41 5.01 -5.20 -0.03 5.39 16 7 C -0.53 -13.39 9.04 -34.44 -0.31 -13.70 16 8 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.13 13.29 55.43 0.74 -23.39 16 11 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.20 3.76 5.98 -5.19 -0.03 3.73 16 16 C -0.02 -0.32 6.90 -35.62 -0.25 -0.56 16 17 C -0.18 -3.47 10.40 -39.70 -0.41 -3.88 16 18 C -0.22 -3.74 10.91 -39.71 -0.43 -4.17 16 19 C -0.06 -0.96 12.09 29.41 0.36 -0.60 16 20 O -0.17 -3.41 10.65 5.68 0.06 -3.35 16 21 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 24 H 0.09 1.51 7.40 -51.93 -0.38 1.13 16 25 H 0.10 2.00 8.00 -51.93 -0.42 1.59 16 26 H 0.04 0.98 6.44 -51.93 -0.33 0.65 16 27 H 0.04 0.85 7.89 -51.93 -0.41 0.44 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.10 1.68 7.89 -51.93 -0.41 1.27 16 30 H 0.09 1.57 7.42 -51.93 -0.39 1.19 16 31 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 32 H 0.14 2.05 8.06 -52.48 -0.42 1.62 16 33 H 0.19 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 289.95 15.07 4.37 4.37 Total: -1.00 -29.84 289.95 -5.69 -35.53 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.41 Total: 3.00 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.08 Total: -5.78 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.31 Total: -36.35 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.15 Total: -16.41 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.84 -5.69 -35.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625871.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.822 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds