Wall clock time and date at job start Sun Mar 29 2020 22:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47283 * 2 1 4 4 O 1.21282 * 119.99548 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99759 * 180.02562 * 3 2 1 6 6 C 1.46493 * 120.00646 * 0.02562 * 5 3 2 7 7 C 1.50695 * 109.47443 * 270.00265 * 6 5 3 8 8 H 1.08001 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00480 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99528 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00487 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46798 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47215 * 119.99681 * 11 9 7 14 14 H 1.48502 * 109.47219 * 239.99952 * 11 9 7 15 15 C 1.46505 * 119.99455 * 180.02562 * 5 3 2 16 16 C 1.50703 * 109.47064 * 90.00114 * 15 5 3 17 17 C 1.34515 * 125.79060 * 89.99944 * 16 15 5 18 18 C 1.41380 * 106.83832 * 179.97438 * 17 16 15 19 19 C 1.34506 * 106.84493 * 359.97438 * 18 17 16 20 20 O 1.34306 * 125.78568 * 269.69282 * 16 15 5 21 21 H 1.09002 * 109.47244 * 59.99807 * 1 2 3 22 22 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46715 * 299.99592 * 1 2 3 24 24 H 1.09006 * 109.47088 * 240.00554 * 2 1 3 25 25 H 1.08999 * 109.47644 * 120.00835 * 2 1 3 26 26 H 1.09006 * 109.46911 * 30.00087 * 6 5 3 27 27 H 1.08996 * 109.47170 * 149.99599 * 6 5 3 28 28 H 0.97003 * 119.99687 * 180.02562 * 10 9 7 29 29 H 1.09002 * 109.47068 * 210.00083 * 15 5 3 30 30 H 1.09001 * 109.47372 * 330.00170 * 15 5 3 31 31 H 1.07996 * 126.58016 * 0.03378 * 17 16 15 32 32 H 1.08006 * 126.57610 * 179.97438 * 18 17 16 33 33 H 1.08005 * 125.79499 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3094 0.5536 -0.0017 7 6 4.6366 0.1709 1.4187 8 1 4.1812 0.7040 2.2402 9 6 5.5172 -0.8599 1.6696 10 7 6.0713 -1.5095 0.6693 11 14 5.9233 -1.3339 3.4302 12 1 5.1735 -0.4563 4.3645 13 1 5.5373 -2.7487 3.6636 14 1 7.3813 -1.1738 3.6623 15 6 3.8457 3.0483 0.0000 16 6 4.0139 3.5211 1.4211 17 6 5.1304 3.4041 2.1621 18 6 4.8469 3.9772 3.4231 19 6 3.5744 4.4105 3.3771 20 8 3.0762 4.1358 2.1604 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.8688 -0.3006 -0.5158 27 1 5.2216 0.8561 -0.5158 28 1 6.6906 -2.2350 0.8458 29 1 4.8057 3.0945 -0.5143 30 1 3.1275 3.6878 -0.5130 31 1 6.0645 2.9589 1.8528 32 1 5.5225 4.0526 4.2624 33 1 3.0443 4.8999 4.1808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060625871.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:23 Heat of formation + Delta-G solvation = -45.618665 kcal Electronic energy + Delta-G solvation = -17249.031443 eV Core-core repulsion = 14468.736306 eV Total energy + Delta-G solvation = -2780.295137 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.37896 -40.70594 -36.92243 -34.67075 -33.86303 -33.63705 -31.52843 -29.17091 -27.25204 -25.14667 -24.19021 -22.55867 -21.46293 -19.89138 -18.72770 -18.22513 -17.95446 -17.16064 -16.50547 -16.47780 -16.17203 -15.44298 -14.74842 -14.31647 -14.14037 -13.77616 -13.66445 -13.50153 -13.41748 -13.08389 -12.93318 -12.71607 -12.55731 -12.45098 -12.02790 -11.97565 -11.68921 -10.81993 -10.72002 -10.53480 -9.66554 -9.27169 -8.17723 -6.27696 0.82124 1.37796 1.42742 1.52178 1.67590 1.81221 2.27492 2.38239 2.53584 3.13993 3.76650 3.92860 4.16851 4.23479 4.30356 4.32311 4.43757 4.52690 4.77425 4.89457 4.98908 5.03044 5.11586 5.12412 5.24559 5.28681 5.34832 5.66781 5.71057 5.81023 6.10422 6.31226 6.55566 6.84671 7.29853 7.44371 8.88561 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.012258 C = 0.008202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.931829 B = 2283.615067 C = 3412.953432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 C 0.509 3.491 4 O -0.590 6.590 5 N -0.597 5.597 6 C 0.250 3.750 7 C -0.524 4.524 8 H 0.045 0.955 9 C 0.027 3.973 10 N -0.918 5.918 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.195 3.805 16 C -0.040 4.040 17 C -0.190 4.190 18 C -0.229 4.229 19 C -0.049 4.049 20 O -0.193 6.193 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.044 0.956 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.038 0.962 27 H 0.028 0.972 28 H 0.266 0.734 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.166 0.834 33 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 5.762 1.562 6.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.176 4.176 3 C 0.299 3.701 4 O -0.473 6.473 5 N -0.328 5.328 6 C 0.129 3.871 7 C -0.563 4.563 8 H 0.063 0.937 9 C -0.173 4.173 10 N -0.558 5.558 11 Si 0.771 3.229 12 H -0.202 1.202 13 H -0.205 1.205 14 H -0.205 1.205 15 C 0.072 3.928 16 C -0.091 4.091 17 C -0.210 4.210 18 C -0.248 4.248 19 C -0.117 4.117 20 O -0.090 6.090 21 H 0.075 0.925 22 H 0.102 0.898 23 H 0.063 0.937 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.817 6.140 1.386 7.361 hybrid contribution 0.865 -0.499 1.143 1.518 sum -2.951 5.642 2.529 6.851 Atomic orbital electron populations 1.21486 0.92389 1.02428 1.01950 1.21610 0.98399 0.92559 1.05014 1.21234 0.81827 0.92555 0.74489 1.90578 1.55933 1.47784 1.52984 1.48362 1.06486 1.07096 1.70821 1.19226 0.87533 0.83863 0.96444 1.21541 1.25789 1.16243 0.92757 0.93656 1.25460 0.95746 0.96057 1.00037 1.69992 1.30723 1.23096 1.31993 0.85708 0.77949 0.77965 0.81281 1.20232 1.20465 1.20490 1.19804 1.02112 0.83082 0.87800 1.23028 0.87820 1.01512 0.96716 1.21717 0.99964 1.04428 0.94939 1.22123 0.97905 1.05437 0.99369 1.24738 0.95300 1.04740 0.86888 1.84051 1.40817 1.60418 1.23676 0.92544 0.89818 0.93700 0.88073 0.89233 0.94398 0.95375 0.92476 0.86074 0.89364 0.83901 0.81647 0.74781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 9.20 71.98 0.66 -3.13 16 2 C -0.14 -4.90 4.97 29.85 0.15 -4.75 16 3 C 0.51 21.46 7.67 87.66 0.67 22.13 16 4 O -0.59 -27.22 15.56 -3.04 -0.05 -27.27 16 5 N -0.60 -25.08 2.44 -830.50 -2.03 -27.11 16 6 C 0.25 11.46 5.01 85.63 0.43 11.88 16 7 C -0.52 -26.53 9.04 25.60 0.23 -26.30 16 8 H 0.05 2.44 7.65 -2.91 -0.02 2.42 16 9 C 0.03 1.39 5.46 84.65 0.46 1.85 16 10 N -0.92 -49.08 13.29 21.45 0.28 -48.80 16 11 Si 0.94 41.82 29.54 68.60 2.03 43.85 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 15 C 0.20 7.37 5.98 85.63 0.51 7.88 16 16 C -0.04 -1.58 6.90 24.83 0.17 -1.41 16 17 C -0.19 -7.22 10.40 22.19 0.23 -6.98 16 18 C -0.23 -7.50 10.91 22.19 0.24 -7.25 16 19 C -0.05 -1.54 12.09 66.97 0.81 -0.73 16 20 O -0.19 -7.58 10.65 -2.58 -0.03 -7.61 16 21 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 22 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 23 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 24 H 0.10 3.35 7.40 -2.38 -0.02 3.33 16 25 H 0.09 3.47 8.00 -2.39 -0.02 3.45 16 26 H 0.04 1.77 6.44 -2.38 -0.02 1.76 16 27 H 0.03 1.34 7.89 -2.39 -0.02 1.32 16 28 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 29 H 0.12 3.98 7.89 -2.39 -0.02 3.96 16 30 H 0.09 3.25 7.42 -2.39 -0.02 3.23 16 31 H 0.14 5.45 8.06 -2.91 -0.02 5.43 16 32 H 0.17 4.41 8.06 -2.91 -0.02 4.38 16 33 H 0.24 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -62.12 289.95 5.87 -56.24 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.09 Total: 17.51 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 4.57 Total: -6.81 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.74 Total: -75.91 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.07 Total: -34.88 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -62.12 5.87 -56.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625871.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.626 kcal (2) G-P(sol) polarization free energy of solvation -62.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds