Wall clock time and date at job start Sun Mar 29 2020 22:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33653 * 125.80022 * 2 1 4 4 C 1.34216 * 110.91209 * 179.97438 * 3 2 1 5 5 C 1.34181 * 109.12025 * 359.71098 * 4 3 2 6 6 C 1.36410 * 125.80582 * 179.97438 * 2 1 3 7 7 C 1.47384 * 127.18908 * 0.02562 * 6 2 1 8 8 O 1.21609 * 120.00074 * 7.76553 * 7 6 2 9 9 N 1.34781 * 119.99790 * 187.77268 * 7 6 2 10 10 C 1.46499 * 120.00041 * 6.21909 * 9 7 6 11 11 C 1.46498 * 120.00031 * 186.22419 * 9 7 6 12 12 H 1.09002 * 109.46905 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.47258 * 119.99832 * 11 9 7 14 14 C 1.50696 * 109.47294 * 239.99767 * 11 9 7 15 15 H 1.08006 * 119.99925 * 0.02562 * 14 11 9 16 16 C 1.37876 * 120.00171 * 179.97438 * 14 11 9 17 17 N 1.31520 * 119.99941 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 119.99936 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47658 * 60.00167 * 18 16 14 20 20 H 1.48508 * 109.46936 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47187 * 299.99746 * 18 16 14 22 22 H 1.08999 * 109.47345 * 269.99519 * 1 2 3 23 23 H 1.08993 * 109.47275 * 30.00278 * 1 2 3 24 24 H 1.09009 * 109.46850 * 149.99902 * 1 2 3 25 25 H 1.07996 * 125.43843 * 180.02562 * 4 3 2 26 26 H 1.08001 * 127.02123 * 180.27249 * 5 4 3 27 27 H 1.09000 * 109.47715 * 275.85168 * 10 9 7 28 28 H 1.09001 * 109.47106 * 155.84554 * 10 9 7 29 29 H 1.09004 * 109.47262 * 35.85303 * 10 9 7 30 30 H 1.09003 * 109.46913 * 300.00240 * 13 11 9 31 31 H 1.08998 * 109.47197 * 59.99658 * 13 11 9 32 32 H 1.08997 * 109.47033 * 180.02562 * 13 11 9 33 33 H 0.96997 * 119.99462 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7392 0.0006 5 6 3.6849 -0.5990 0.0073 6 6 2.3050 -1.1063 0.0005 7 6 1.8740 -2.5157 0.0006 8 8 0.6983 -2.7920 -0.1421 9 7 2.7828 -3.4983 0.1590 10 6 4.1758 -3.1650 0.4667 11 6 2.3777 -4.8996 0.0233 12 1 1.3131 -4.9495 -0.2052 13 6 3.1729 -5.5531 -1.1087 14 6 2.6498 -5.6284 1.3140 15 1 3.0810 -5.1004 2.1517 16 6 2.3473 -6.9689 1.4257 17 7 1.8209 -7.6115 0.4061 18 14 2.6839 -7.8721 3.0258 19 1 1.9121 -7.2374 4.1244 20 1 2.2722 -9.2923 2.8886 21 1 4.1344 -7.8045 3.3367 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8901 -0.5139 25 1 4.4171 1.4286 0.0011 26 1 4.5929 -1.1838 0.0136 27 1 4.7097 -2.9451 -0.4579 28 1 4.6493 -4.0094 0.9676 29 1 4.2051 -2.2925 1.1194 30 1 2.9761 -5.0259 -2.0423 31 1 4.2376 -5.5031 -0.8808 32 1 2.8712 -6.5956 -1.2099 33 1 1.6078 -8.5545 0.4849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093746.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:48 Heat of formation + Delta-G solvation = -31.614841 kcal Electronic energy + Delta-G solvation = -17054.090107 eV Core-core repulsion = 14274.402221 eV Total energy + Delta-G solvation = -2779.687886 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.49552 -40.47267 -37.19967 -35.06851 -33.85786 -32.77379 -31.18471 -28.23558 -27.43885 -27.28484 -24.63958 -22.71394 -21.55749 -19.79727 -18.55781 -18.16663 -17.38797 -17.22615 -16.80272 -16.08844 -15.90300 -15.15120 -14.61587 -14.20276 -14.12134 -14.09611 -13.95101 -13.73896 -13.53119 -12.96829 -12.79315 -12.72393 -12.59063 -12.28851 -12.15702 -12.12516 -11.23289 -10.78904 -10.68143 -10.50822 -9.60516 -9.23249 -8.15503 -6.32412 0.40813 1.21292 1.40750 1.43471 1.51008 1.91409 2.30183 2.45577 2.51575 3.12122 3.69497 3.80342 4.00312 4.36461 4.42524 4.61565 4.62461 4.67368 4.74858 4.79394 4.88323 4.91379 4.99379 5.05915 5.25025 5.44139 5.45942 5.60275 5.65887 6.01181 6.12648 6.15272 6.74586 6.81515 7.29560 7.46193 8.88904 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037061 B = 0.006544 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.333125 B = 4277.450677 C = 4420.897219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.061 3.939 3 O -0.178 6.178 4 C -0.026 4.026 5 C -0.213 4.213 6 C -0.266 4.266 7 C 0.563 3.437 8 O -0.600 6.600 9 N -0.593 5.593 10 C 0.075 3.925 11 C 0.263 3.737 12 H 0.009 0.991 13 C -0.131 4.131 14 C -0.542 4.542 15 H 0.059 0.941 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.966 3.034 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.261 1.261 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.257 0.743 26 H 0.188 0.812 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.538 15.732 -0.183 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.008 3.992 3 O -0.074 6.074 4 C -0.091 4.091 5 C -0.231 4.231 6 C -0.271 4.271 7 C 0.354 3.646 8 O -0.484 6.484 9 N -0.323 5.323 10 C -0.067 4.067 11 C 0.161 3.839 12 H 0.027 0.973 13 C -0.189 4.189 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.791 3.209 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.186 1.186 22 H 0.111 0.889 23 H 0.124 0.876 24 H 0.102 0.898 25 H 0.273 0.727 26 H 0.205 0.795 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.819 15.660 -0.313 16.709 hybrid contribution 0.002 -1.200 0.613 1.347 sum 5.821 14.460 0.300 15.591 Atomic orbital electron populations 1.20580 0.83242 1.05089 1.04709 1.22978 0.94804 0.83170 0.98227 1.83753 1.18103 1.34196 1.71342 1.24809 0.83475 0.96538 1.04289 1.23773 0.96427 0.95473 1.07433 1.21328 0.95940 0.92618 1.17197 1.17902 0.84992 0.85258 0.76463 1.90644 1.18855 1.84708 1.54209 1.48008 1.10135 1.06824 1.67285 1.22314 0.81142 1.02261 1.00977 1.18567 0.94248 0.76199 0.94909 0.97266 1.21875 0.99282 1.02170 0.95622 1.21542 1.42892 0.95007 0.98557 0.92302 1.25745 0.94439 0.98134 1.00069 1.70015 1.43126 1.10423 1.32029 0.85494 0.79111 0.77206 0.79112 1.20410 1.20659 1.18581 0.88937 0.87644 0.89832 0.72722 0.79549 0.91133 0.91152 0.89282 0.96225 0.93365 0.91168 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 9.97 71.24 0.71 -1.47 16 2 C 0.06 1.88 7.37 25.26 0.19 2.07 16 3 O -0.18 -4.39 10.52 4.46 0.05 -4.34 16 4 C -0.03 -0.50 12.03 66.89 0.80 0.30 16 5 C -0.21 -5.36 8.87 23.65 0.21 -5.15 16 6 C -0.27 -9.42 6.06 -18.99 -0.12 -9.54 16 7 C 0.56 25.93 7.65 86.65 0.66 26.59 16 8 O -0.60 -32.11 14.17 -4.06 -0.06 -32.17 16 9 N -0.59 -27.10 2.75 -830.73 -2.29 -29.39 16 10 C 0.07 2.54 7.60 127.77 0.97 3.51 16 11 C 0.26 14.27 2.62 44.24 0.12 14.38 16 12 H 0.01 0.60 6.92 -2.39 -0.02 0.59 16 13 C -0.13 -6.52 8.97 71.98 0.65 -5.87 16 14 C -0.54 -30.41 7.95 25.60 0.20 -30.20 16 15 H 0.06 3.22 7.43 -2.91 -0.02 3.20 16 16 C 0.02 0.88 5.30 84.65 0.45 1.33 16 17 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 18 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.08 2.80 6.36 -2.38 -0.02 2.79 16 25 H 0.26 1.94 8.06 -2.91 -0.02 1.92 16 26 H 0.19 3.86 4.88 -2.91 -0.01 3.85 16 27 H 0.07 1.99 7.34 -2.39 -0.02 1.97 16 28 H 0.07 2.51 7.11 -2.39 -0.02 2.50 16 29 H 0.09 2.56 5.37 -2.38 -0.01 2.55 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 2.16 7.67 -2.39 -0.02 2.15 16 32 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 33 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -73.12 273.97 5.94 -67.18 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.12 Total: 10.52 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.84 Total: -4.04 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.04 Total: -82.86 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.01 Total: -36.51 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -73.12 5.94 -67.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093746.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.568 kcal (2) G-P(sol) polarization free energy of solvation -73.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds