Wall clock time and date at job start Sun Mar 29 2020 22:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33652 * 125.80121 * 2 1 4 4 C 1.34214 * 110.90855 * 180.26981 * 3 2 1 5 5 C 1.34181 * 109.12220 * 359.76406 * 4 3 2 6 6 C 1.36416 * 125.80248 * 179.86556 * 2 1 3 7 7 C 1.47378 * 127.19180 * 0.02562 * 6 2 1 8 8 O 1.21617 * 120.00045 * 349.08107 * 7 6 2 9 9 N 1.34778 * 120.00006 * 169.08178 * 7 6 2 10 10 C 1.46499 * 120.00146 * 1.01861 * 9 7 6 11 11 C 1.46505 * 120.00114 * 181.01910 * 9 7 6 12 12 H 1.09005 * 109.46733 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47232 * 239.99891 * 11 9 7 14 14 C 1.50702 * 109.47013 * 119.99633 * 11 9 7 15 15 H 1.08000 * 119.99831 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99732 * 179.97438 * 14 11 9 17 17 N 1.31513 * 120.00140 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99653 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47474 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46914 * 120.00588 * 18 16 14 21 21 H 1.48495 * 109.47361 * 240.00009 * 18 16 14 22 22 H 1.08999 * 109.47122 * 270.13595 * 1 2 3 23 23 H 1.08997 * 109.47389 * 30.14026 * 1 2 3 24 24 H 1.09009 * 109.46737 * 150.13505 * 1 2 3 25 25 H 1.07998 * 125.43641 * 179.76265 * 4 3 2 26 26 H 1.08007 * 127.02055 * 179.97438 * 5 4 3 27 27 H 1.08993 * 109.46944 * 83.30247 * 10 9 7 28 28 H 1.08997 * 109.46990 * 203.30784 * 10 9 7 29 29 H 1.09000 * 109.46737 * 323.30547 * 10 9 7 30 30 H 1.08999 * 109.46860 * 300.00216 * 13 11 9 31 31 H 1.09003 * 109.46951 * 59.99690 * 13 11 9 32 32 H 1.08994 * 109.47032 * 179.97438 * 13 11 9 33 33 H 0.97000 * 120.00282 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 -0.0059 5 6 3.6849 -0.5991 -0.0047 6 6 2.3051 -1.1064 0.0026 7 6 1.8740 -2.5157 0.0054 8 8 0.7072 -2.7944 0.2050 9 7 2.7730 -3.4958 -0.2133 10 6 4.1825 -3.1615 -0.4317 11 6 2.3406 -4.8954 -0.2328 12 1 1.2666 -4.9464 -0.0533 13 6 3.0782 -5.6723 0.8596 14 6 2.6539 -5.4994 -1.5775 15 1 3.1281 -4.9006 -2.3410 16 6 2.3361 -6.8166 -1.8325 17 7 1.7592 -7.5458 -0.9025 18 14 2.7238 -7.5649 -3.4995 19 1 3.3675 -6.5428 -4.3634 20 1 3.6462 -8.7153 -3.3232 21 1 1.4666 -8.0318 -4.1370 22 1 -0.3633 0.0024 1.0276 23 1 -0.3634 0.8887 -0.5160 24 1 -0.3633 -0.8913 -0.5118 25 1 4.4172 1.4285 -0.0108 26 1 4.5929 -1.1840 -0.0088 27 1 4.6777 -3.0291 0.5302 28 1 4.6664 -3.9688 -0.9814 29 1 4.2521 -2.2380 -1.0063 30 1 4.1520 -5.6212 0.6797 31 1 2.8516 -5.2354 1.8322 32 1 2.7562 -6.7135 0.8454 33 1 1.5360 -8.4726 -1.0817 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:51 Heat of formation + Delta-G solvation = -7.969391 kcal Electronic energy + Delta-G solvation = -17058.331690 eV Core-core repulsion = 14279.669148 eV Total energy + Delta-G solvation = -2778.662542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.36322 -38.76054 -35.35332 -33.36105 -32.36319 -31.61242 -29.30305 -26.90490 -26.04941 -25.20165 -23.09216 -21.41999 -19.95687 -18.42689 -16.86810 -16.40790 -16.14352 -15.63445 -15.20110 -14.39302 -14.23355 -13.79943 -13.06378 -12.92512 -12.83145 -12.70446 -12.39389 -12.22499 -11.63171 -11.49074 -11.08457 -10.86424 -10.83353 -10.63468 -10.22628 -10.16620 -9.51851 -9.16137 -8.98825 -8.41935 -8.38705 -7.51960 -6.06329 -4.14146 1.69847 2.29788 3.00537 3.26401 3.34349 3.37596 3.94738 4.09459 4.41236 4.71672 5.10238 5.18891 5.24814 5.43056 5.68755 5.71004 5.78023 5.85902 6.00704 6.05970 6.34968 6.39465 6.50085 6.78256 6.86989 7.08814 7.21201 7.48051 7.57353 7.73731 8.04248 8.21787 8.57191 8.85271 9.10830 9.52476 10.99066 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035594 B = 0.006601 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.467649 B = 4240.976156 C = 4358.449859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.059 3.941 3 O -0.182 6.182 4 C -0.054 4.054 5 C -0.199 4.199 6 C -0.228 4.228 7 C 0.574 3.426 8 O -0.555 6.555 9 N -0.582 5.582 10 C 0.070 3.930 11 C 0.257 3.743 12 H 0.064 0.936 13 C -0.146 4.146 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.898 3.102 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.203 0.797 26 H 0.172 0.828 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.011 0.989 32 H 0.093 0.907 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.449 13.594 1.657 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.007 3.993 3 O -0.079 6.079 4 C -0.120 4.120 5 C -0.218 4.218 6 C -0.232 4.232 7 C 0.362 3.638 8 O -0.436 6.436 9 N -0.312 5.312 10 C -0.073 4.073 11 C 0.157 3.843 12 H 0.082 0.918 13 C -0.204 4.204 14 C -0.564 4.564 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.125 0.875 25 H 0.220 0.780 26 H 0.189 0.811 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.112 0.888 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.690 13.496 1.786 14.105 hybrid contribution 0.703 -0.623 -0.895 1.297 sum 4.393 12.873 0.891 13.632 Atomic orbital electron populations 1.20503 0.83951 1.04529 1.04117 1.22752 0.94015 0.83111 0.99448 1.83700 1.17138 1.35207 1.71864 1.23843 0.83550 0.96477 1.08104 1.23679 0.97799 0.94309 1.05991 1.21505 0.93025 0.94833 1.13871 1.17217 0.85513 0.83433 0.77640 1.90701 1.17580 1.83587 1.51720 1.48014 1.07110 1.08471 1.67618 1.22182 0.83461 1.01884 0.99812 1.18972 0.96972 0.73535 0.94771 0.91785 1.22083 0.98707 1.04023 0.95624 1.21377 1.40599 0.96204 0.98190 0.92180 1.24896 0.94856 0.96920 0.97136 1.69892 1.41366 1.08438 1.32907 0.86439 0.78083 0.79049 0.83818 1.19821 1.20929 1.20888 0.89611 0.90972 0.87521 0.78005 0.81071 0.93925 0.90191 0.91260 0.95189 0.96990 0.88805 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 9.79 36.01 0.35 -0.68 16 2 C 0.06 0.95 7.37 -34.96 -0.26 0.69 16 3 O -0.18 -2.57 10.52 7.65 0.08 -2.49 16 4 C -0.05 -0.65 12.03 29.30 0.35 -0.29 16 5 C -0.20 -2.83 8.86 -37.46 -0.33 -3.16 16 6 C -0.23 -4.13 6.08 -103.28 -0.63 -4.76 16 7 C 0.57 12.84 7.65 -12.54 -0.10 12.74 16 8 O -0.55 -13.97 14.36 5.26 0.08 -13.89 16 9 N -0.58 -13.11 2.75 -176.55 -0.49 -13.59 16 10 C 0.07 1.24 7.67 59.85 0.46 1.70 16 11 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 12 H 0.06 1.93 6.90 -51.93 -0.36 1.57 16 13 C -0.15 -3.58 8.97 37.16 0.33 -3.24 16 14 C -0.52 -14.41 7.95 -34.44 -0.27 -14.68 16 15 H 0.06 1.63 7.45 -52.49 -0.39 1.24 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -25.32 11.32 55.43 0.63 -24.70 16 18 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.11 1.70 6.76 -51.92 -0.35 1.35 16 25 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 26 H 0.17 2.09 4.91 -52.48 -0.26 1.84 16 27 H 0.04 0.66 7.67 -51.93 -0.40 0.26 16 28 H 0.08 1.48 7.13 -51.93 -0.37 1.11 16 29 H 0.07 1.07 4.82 -51.93 -0.25 0.82 16 30 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 274.30 15.07 4.13 4.13 Total: -1.00 -32.07 274.30 -4.87 -36.94 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.92 Total: 0.89 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.37 Total: -3.44 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.14 Total: -38.29 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.16 Total: -16.39 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.07 -4.87 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.970 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds