Wall clock time and date at job start Sun Mar 29 2020 22:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33652 * 125.80121 * 2 1 4 4 C 1.34214 * 110.90855 * 180.26981 * 3 2 1 5 5 C 1.34181 * 109.12220 * 359.76406 * 4 3 2 6 6 C 1.36416 * 125.80248 * 179.86556 * 2 1 3 7 7 C 1.47378 * 127.19180 * 0.02562 * 6 2 1 8 8 O 1.21617 * 120.00045 * 349.08107 * 7 6 2 9 9 N 1.34778 * 120.00006 * 169.08178 * 7 6 2 10 10 C 1.46499 * 120.00146 * 1.01861 * 9 7 6 11 11 C 1.46505 * 120.00114 * 181.01910 * 9 7 6 12 12 H 1.09005 * 109.46733 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47232 * 239.99891 * 11 9 7 14 14 C 1.50702 * 109.47013 * 119.99633 * 11 9 7 15 15 H 1.08000 * 119.99831 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99732 * 179.97438 * 14 11 9 17 17 N 1.31513 * 120.00140 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99653 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47474 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46914 * 120.00588 * 18 16 14 21 21 H 1.48495 * 109.47361 * 240.00009 * 18 16 14 22 22 H 1.08999 * 109.47122 * 270.13595 * 1 2 3 23 23 H 1.08997 * 109.47389 * 30.14026 * 1 2 3 24 24 H 1.09009 * 109.46737 * 150.13505 * 1 2 3 25 25 H 1.07998 * 125.43641 * 179.76265 * 4 3 2 26 26 H 1.08007 * 127.02055 * 179.97438 * 5 4 3 27 27 H 1.08993 * 109.46944 * 83.30247 * 10 9 7 28 28 H 1.08997 * 109.46990 * 203.30784 * 10 9 7 29 29 H 1.09000 * 109.46737 * 323.30547 * 10 9 7 30 30 H 1.08999 * 109.46860 * 300.00216 * 13 11 9 31 31 H 1.09003 * 109.46951 * 59.99690 * 13 11 9 32 32 H 1.08994 * 109.47032 * 179.97438 * 13 11 9 33 33 H 0.97000 * 120.00282 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 -0.0059 5 6 3.6849 -0.5991 -0.0047 6 6 2.3051 -1.1064 0.0026 7 6 1.8740 -2.5157 0.0054 8 8 0.7072 -2.7944 0.2050 9 7 2.7730 -3.4958 -0.2133 10 6 4.1825 -3.1615 -0.4317 11 6 2.3406 -4.8954 -0.2328 12 1 1.2666 -4.9464 -0.0533 13 6 3.0782 -5.6723 0.8596 14 6 2.6539 -5.4994 -1.5775 15 1 3.1281 -4.9006 -2.3410 16 6 2.3361 -6.8166 -1.8325 17 7 1.7592 -7.5458 -0.9025 18 14 2.7238 -7.5649 -3.4995 19 1 3.3675 -6.5428 -4.3634 20 1 3.6462 -8.7153 -3.3232 21 1 1.4666 -8.0318 -4.1370 22 1 -0.3633 0.0024 1.0276 23 1 -0.3634 0.8887 -0.5160 24 1 -0.3633 -0.8913 -0.5118 25 1 4.4172 1.4285 -0.0108 26 1 4.5929 -1.1840 -0.0088 27 1 4.6777 -3.0291 0.5302 28 1 4.6664 -3.9688 -0.9814 29 1 4.2521 -2.2380 -1.0063 30 1 4.1520 -5.6212 0.6797 31 1 2.8516 -5.2354 1.8322 32 1 2.7562 -6.7135 0.8454 33 1 1.5360 -8.4726 -1.0817 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:51 Heat of formation + Delta-G solvation = -29.053095 kcal Electronic energy + Delta-G solvation = -17059.245948 eV Core-core repulsion = 14279.669148 eV Total energy + Delta-G solvation = -2779.576800 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.50076 -40.47353 -37.19505 -35.08731 -33.86980 -32.78932 -31.18163 -28.23997 -27.44795 -27.29450 -24.64201 -22.72824 -21.59793 -19.77887 -18.56835 -18.13130 -17.41185 -17.22691 -16.82809 -16.08610 -15.91004 -15.15735 -14.65628 -14.20331 -14.12898 -14.10792 -13.93423 -13.73639 -13.52112 -12.99453 -12.78061 -12.72657 -12.59463 -12.26575 -12.12915 -12.09989 -11.21558 -10.81590 -10.67581 -10.51303 -9.61613 -9.22500 -8.16187 -6.33120 0.41757 1.21042 1.40147 1.41699 1.53405 1.91173 2.28517 2.45576 2.52038 3.11583 3.69243 3.80275 4.00360 4.34463 4.43793 4.61792 4.63191 4.66997 4.73660 4.78887 4.88194 4.89747 4.99782 5.06546 5.23594 5.43619 5.45762 5.59604 5.65561 6.00974 6.12342 6.14469 6.74498 6.81414 7.29226 7.46010 8.88694 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035594 B = 0.006601 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.467649 B = 4240.976156 C = 4358.449859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 O -0.178 6.178 4 C -0.025 4.025 5 C -0.215 4.215 6 C -0.266 4.266 7 C 0.562 3.438 8 O -0.601 6.601 9 N -0.592 5.592 10 C 0.068 3.932 11 C 0.262 3.738 12 H 0.010 0.990 13 C -0.131 4.131 14 C -0.539 4.539 15 H 0.060 0.940 16 C 0.015 3.985 17 N -0.918 5.918 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.284 1.284 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.077 0.923 25 H 0.257 0.743 26 H 0.191 0.809 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 15.690 0.915 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.007 3.993 3 O -0.074 6.074 4 C -0.090 4.090 5 C -0.234 4.234 6 C -0.270 4.270 7 C 0.353 3.647 8 O -0.485 6.485 9 N -0.321 5.321 10 C -0.074 4.074 11 C 0.160 3.840 12 H 0.028 0.972 13 C -0.190 4.190 14 C -0.578 4.578 15 H 0.078 0.922 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.210 1.210 22 H 0.112 0.888 23 H 0.123 0.877 24 H 0.095 0.905 25 H 0.273 0.727 26 H 0.207 0.793 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.088 0.912 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.911 15.619 1.046 16.733 hybrid contribution 0.014 -1.186 -0.625 1.341 sum 5.925 14.433 0.421 15.607 Atomic orbital electron populations 1.20504 0.83225 1.04632 1.04728 1.22962 0.94804 0.83171 0.98355 1.83752 1.18105 1.34157 1.71345 1.24827 0.83481 0.96543 1.04164 1.23823 0.96469 0.95478 1.07601 1.21329 0.95971 0.92625 1.17082 1.17897 0.84898 0.85266 0.76641 1.90659 1.19500 1.84655 1.53706 1.48014 1.09227 1.07083 1.67797 1.22448 0.80623 1.02690 1.01608 1.18585 0.94208 0.76187 0.95046 0.97204 1.21870 0.99391 1.02258 0.95439 1.21597 1.40828 0.96633 0.98722 0.92209 1.25756 0.94519 0.97342 1.00845 1.70030 1.41987 1.08772 1.34867 0.85371 0.77850 0.78402 0.79173 1.18973 1.19764 1.21013 0.88751 0.87684 0.90462 0.72682 0.79263 0.91302 0.91145 0.88583 0.93390 0.96337 0.91178 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 9.79 71.24 0.70 -1.34 16 2 C 0.06 1.85 7.37 25.26 0.19 2.04 16 3 O -0.18 -4.38 10.52 4.47 0.05 -4.33 16 4 C -0.03 -0.48 12.03 66.89 0.80 0.32 16 5 C -0.22 -5.42 8.86 23.65 0.21 -5.21 16 6 C -0.27 -9.42 6.08 -18.99 -0.12 -9.53 16 7 C 0.56 25.93 7.65 86.65 0.66 26.60 16 8 O -0.60 -32.17 14.36 -4.08 -0.06 -32.23 16 9 N -0.59 -27.11 2.75 -830.73 -2.29 -29.39 16 10 C 0.07 2.31 7.67 127.77 0.98 3.29 16 11 C 0.26 14.24 2.63 44.24 0.12 14.35 16 12 H 0.01 0.64 6.90 -2.38 -0.02 0.63 16 13 C -0.13 -6.57 8.97 71.98 0.65 -5.92 16 14 C -0.54 -30.20 7.95 25.60 0.20 -29.99 16 15 H 0.06 3.27 7.45 -2.91 -0.02 3.25 16 16 C 0.01 0.83 5.30 84.66 0.45 1.28 16 17 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 18 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.08 2.59 6.76 -2.38 -0.02 2.58 16 25 H 0.26 1.92 8.06 -2.91 -0.02 1.90 16 26 H 0.19 3.90 4.91 -2.91 -0.01 3.88 16 27 H 0.07 1.97 7.67 -2.39 -0.02 1.95 16 28 H 0.07 2.52 7.13 -2.39 -0.02 2.50 16 29 H 0.10 2.74 4.82 -2.39 -0.01 2.73 16 30 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 33 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -73.33 274.30 5.93 -67.40 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.12 Total: 10.53 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 4.84 Total: -4.12 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.04 Total: -82.88 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.01 Total: -36.56 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.33 5.93 -67.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.349 kcal (2) G-P(sol) polarization free energy of solvation -73.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds