Wall clock time and date at job start Sun Mar 29 2020 22:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35126 * 125.61788 * 2 1 4 4 C 1.40363 * 107.11798 * 179.73402 * 3 2 1 5 5 C 1.36541 * 106.70815 * 0.02562 * 4 3 2 6 6 C 1.46659 * 125.99201 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99614 * 353.21151 * 6 5 4 8 8 N 1.34773 * 120.00300 * 173.21616 * 6 5 4 9 9 C 1.46500 * 119.99785 * 3.37988 * 8 6 5 10 10 C 1.46492 * 120.00225 * 183.38052 * 8 6 5 11 11 H 1.09003 * 109.47124 * 359.97438 * 10 8 6 12 12 C 1.52998 * 109.47284 * 120.00049 * 10 8 6 13 13 C 1.50700 * 109.47380 * 240.00336 * 10 8 6 14 14 H 1.08004 * 119.99752 * 359.97438 * 13 10 8 15 15 C 1.37878 * 120.00378 * 179.97438 * 13 10 8 16 16 N 1.31519 * 119.99756 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00298 * 179.97438 * 15 13 10 18 18 H 1.48510 * 109.46872 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46788 * 120.00037 * 17 15 13 20 20 H 1.48494 * 109.47645 * 240.00345 * 17 15 13 21 21 O 1.33931 * 125.61413 * 179.68918 * 2 1 3 22 22 H 1.09001 * 109.47070 * 90.00266 * 1 2 3 23 23 H 1.08994 * 109.47129 * 210.00234 * 1 2 3 24 24 H 1.09003 * 109.47064 * 330.00618 * 1 2 3 25 25 H 1.08010 * 126.44183 * 359.75604 * 3 2 1 26 26 H 1.07996 * 126.64585 * 179.97438 * 4 3 2 27 27 H 1.09005 * 109.47336 * 84.01052 * 9 8 6 28 28 H 1.09002 * 109.47053 * 204.00579 * 9 8 6 29 29 H 1.09001 * 109.47512 * 324.00852 * 9 8 6 30 30 H 1.09003 * 109.46906 * 299.99614 * 12 10 8 31 31 H 1.08998 * 109.47080 * 60.00319 * 12 10 8 32 32 H 1.09008 * 109.46960 * 180.02562 * 12 10 8 33 33 H 0.97002 * 119.99734 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 0.0062 5 6 3.5823 -0.7116 0.0092 6 6 4.7414 -1.6102 0.0152 7 8 5.8639 -1.1561 -0.1065 8 7 4.5635 -2.9387 0.1555 9 6 3.2092 -3.4928 0.2275 10 6 5.7242 -3.8288 0.2359 11 1 6.6390 -3.2403 0.1645 12 6 5.7015 -4.5772 1.5702 13 6 5.6761 -4.8209 -0.8974 14 1 4.8620 -4.7916 -1.6065 15 6 6.6714 -5.7659 -1.0292 16 7 7.6630 -5.8013 -0.1660 17 14 6.6113 -6.9961 -2.4336 18 1 5.4027 -6.7459 -3.2595 19 1 7.8254 -6.8458 -3.2755 20 1 6.5584 -8.3741 -1.8829 21 8 2.2869 -1.0888 0.0059 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 1.9613 2.1260 -0.0037 26 1 4.5113 1.2703 0.0075 27 1 2.8217 -3.6374 -0.7810 28 1 3.2356 -4.4505 0.7474 29 1 2.5626 -2.8028 0.7697 30 1 5.7365 -3.8596 2.3899 31 1 4.7869 -5.1658 1.6411 32 1 6.5655 -5.2392 1.6302 33 1 8.3634 -6.4660 -0.2589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:53 Heat of formation + Delta-G solvation = -18.116506 kcal Electronic energy + Delta-G solvation = -16942.328051 eV Core-core repulsion = 14163.225497 eV Total energy + Delta-G solvation = -2779.102554 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.50081 -38.79512 -35.47863 -33.31458 -32.67265 -31.81699 -29.56759 -26.93534 -26.09613 -25.20947 -22.57173 -21.36017 -20.41061 -19.09723 -16.95850 -16.46231 -16.17873 -15.68084 -15.09544 -14.34230 -14.22275 -13.41392 -13.23843 -13.05531 -12.96786 -12.78109 -12.58950 -12.35364 -11.98066 -11.55485 -11.22890 -11.06960 -10.81988 -10.71440 -10.26306 -10.18683 -9.82706 -9.37654 -9.16320 -8.44839 -8.32095 -7.62332 -6.08073 -4.15933 1.39491 2.52005 2.88857 3.26518 3.34405 3.38056 3.80111 3.91057 4.39958 4.71398 5.03025 5.07251 5.23196 5.29457 5.30881 5.53438 5.77279 5.89811 5.98691 6.04031 6.20655 6.40461 6.55439 6.75299 6.80702 7.00181 7.09824 7.39453 7.48980 7.69432 7.99007 8.15712 8.43796 8.76783 8.94132 9.50327 10.97455 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038033 B = 0.006308 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.025894 B = 4437.923950 C = 4666.259904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.008 4.008 3 C -0.222 4.222 4 C -0.138 4.138 5 C -0.055 4.055 6 C 0.583 3.417 7 O -0.533 6.533 8 N -0.579 5.579 9 C 0.084 3.916 10 C 0.256 3.744 11 H 0.066 0.934 12 C -0.147 4.147 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.900 3.100 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 O -0.153 6.153 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.150 0.850 26 H 0.156 0.844 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.013 0.987 31 H 0.032 0.968 32 H 0.096 0.904 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.711 8.673 1.839 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.060 4.060 3 C -0.241 4.241 4 C -0.159 4.159 5 C -0.107 4.107 6 C 0.369 3.631 7 O -0.413 6.413 8 N -0.308 5.308 9 C -0.059 4.059 10 C 0.156 3.844 11 H 0.084 0.916 12 C -0.206 4.206 13 C -0.564 4.564 14 H 0.079 0.921 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.728 3.272 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 O -0.049 6.049 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.168 0.832 26 H 0.174 0.826 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.030 8.426 1.824 15.624 hybrid contribution -0.023 -0.516 -0.785 0.940 sum -13.052 7.910 1.039 15.298 Atomic orbital electron populations 1.20328 0.85107 1.04037 1.03572 1.22814 0.94317 0.84931 1.03932 1.21494 0.92520 0.99379 1.10671 1.21867 0.98322 0.93151 1.02535 1.22630 0.81854 0.94937 1.11307 1.16745 0.85630 0.82026 0.78729 1.90827 1.22339 1.75847 1.52239 1.48231 1.09156 1.05482 1.67934 1.21758 0.83038 0.99733 1.01398 1.19073 0.83422 0.87805 0.94092 0.91623 1.22111 1.02655 0.99969 0.95851 1.21342 1.09278 1.14557 1.11174 0.92128 1.24895 0.95029 0.97473 0.96387 1.69890 1.11604 1.35476 1.35638 0.86409 0.78091 0.80707 0.82007 1.19811 1.20864 1.20894 1.84324 1.16317 1.33835 1.70462 0.89976 0.90389 0.89441 0.83247 0.82597 0.93206 0.90350 0.91774 0.96817 0.94941 0.88564 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.41 36.01 0.37 -0.21 16 2 C -0.01 -0.10 7.31 -35.41 -0.26 -0.36 16 3 C -0.22 -2.87 10.77 -39.89 -0.43 -3.30 16 4 C -0.14 -2.23 10.63 -39.40 -0.42 -2.65 16 5 C -0.06 -1.03 6.77 -36.80 -0.25 -1.28 16 6 C 0.58 13.26 7.64 -12.86 -0.10 13.16 16 7 O -0.53 -13.79 16.21 5.19 0.08 -13.70 16 8 N -0.58 -13.22 2.75 -176.82 -0.49 -13.70 16 9 C 0.08 1.57 8.83 59.85 0.53 2.09 16 10 C 0.26 6.70 2.62 -69.09 -0.18 6.52 16 11 H 0.07 1.97 6.90 -51.93 -0.36 1.61 16 12 C -0.15 -3.57 8.96 37.16 0.33 -3.24 16 13 C -0.52 -14.47 8.37 -34.44 -0.29 -14.76 16 14 H 0.06 1.66 7.65 -52.48 -0.40 1.26 16 15 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 16 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 17 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 O -0.15 -2.47 7.29 4.98 0.04 -2.44 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 26 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.43 6.44 -51.93 -0.33 1.09 16 29 H 0.06 1.06 5.40 -51.93 -0.28 0.78 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.03 0.72 6.67 -51.93 -0.35 0.37 16 32 H 0.10 2.53 6.07 -51.92 -0.32 2.22 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 280.32 15.07 4.22 4.22 Total: -1.00 -31.53 280.32 -5.45 -36.98 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.13 Total: -0.65 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.78 Total: -2.33 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.14 Total: -38.30 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.12 Total: -16.14 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.53 -5.45 -36.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.859 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds