Wall clock time and date at job start Sun Mar 29 2020 22:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35126 * 125.61788 * 2 1 4 4 C 1.40363 * 107.11798 * 179.73402 * 3 2 1 5 5 C 1.36541 * 106.70815 * 0.02562 * 4 3 2 6 6 C 1.46659 * 125.99201 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99614 * 353.21151 * 6 5 4 8 8 N 1.34773 * 120.00300 * 173.21616 * 6 5 4 9 9 C 1.46500 * 119.99785 * 3.37988 * 8 6 5 10 10 C 1.46492 * 120.00225 * 183.38052 * 8 6 5 11 11 H 1.09003 * 109.47124 * 359.97438 * 10 8 6 12 12 C 1.52998 * 109.47284 * 120.00049 * 10 8 6 13 13 C 1.50700 * 109.47380 * 240.00336 * 10 8 6 14 14 H 1.08004 * 119.99752 * 359.97438 * 13 10 8 15 15 C 1.37878 * 120.00378 * 179.97438 * 13 10 8 16 16 N 1.31519 * 119.99756 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00298 * 179.97438 * 15 13 10 18 18 H 1.48510 * 109.46872 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46788 * 120.00037 * 17 15 13 20 20 H 1.48494 * 109.47645 * 240.00345 * 17 15 13 21 21 O 1.33931 * 125.61413 * 179.68918 * 2 1 3 22 22 H 1.09001 * 109.47070 * 90.00266 * 1 2 3 23 23 H 1.08994 * 109.47129 * 210.00234 * 1 2 3 24 24 H 1.09003 * 109.47064 * 330.00618 * 1 2 3 25 25 H 1.08010 * 126.44183 * 359.75604 * 3 2 1 26 26 H 1.07996 * 126.64585 * 179.97438 * 4 3 2 27 27 H 1.09005 * 109.47336 * 84.01052 * 9 8 6 28 28 H 1.09002 * 109.47053 * 204.00579 * 9 8 6 29 29 H 1.09001 * 109.47512 * 324.00852 * 9 8 6 30 30 H 1.09003 * 109.46906 * 299.99614 * 12 10 8 31 31 H 1.08998 * 109.47080 * 60.00319 * 12 10 8 32 32 H 1.09008 * 109.46960 * 180.02562 * 12 10 8 33 33 H 0.97002 * 119.99734 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 0.0062 5 6 3.5823 -0.7116 0.0092 6 6 4.7414 -1.6102 0.0152 7 8 5.8639 -1.1561 -0.1065 8 7 4.5635 -2.9387 0.1555 9 6 3.2092 -3.4928 0.2275 10 6 5.7242 -3.8288 0.2359 11 1 6.6390 -3.2403 0.1645 12 6 5.7015 -4.5772 1.5702 13 6 5.6761 -4.8209 -0.8974 14 1 4.8620 -4.7916 -1.6065 15 6 6.6714 -5.7659 -1.0292 16 7 7.6630 -5.8013 -0.1660 17 14 6.6113 -6.9961 -2.4336 18 1 5.4027 -6.7459 -3.2595 19 1 7.8254 -6.8458 -3.2755 20 1 6.5584 -8.3741 -1.8829 21 8 2.2869 -1.0888 0.0059 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 1.9613 2.1260 -0.0037 26 1 4.5113 1.2703 0.0075 27 1 2.8217 -3.6374 -0.7810 28 1 3.2356 -4.4505 0.7474 29 1 2.5626 -2.8028 0.7697 30 1 5.7365 -3.8596 2.3899 31 1 4.7869 -5.1658 1.6411 32 1 6.5655 -5.2392 1.6302 33 1 8.3634 -6.4660 -0.2589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:53 Heat of formation + Delta-G solvation = -38.265533 kcal Electronic energy + Delta-G solvation = -16943.201778 eV Core-core repulsion = 14163.225497 eV Total energy + Delta-G solvation = -2779.976281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.69835 -40.55670 -37.34349 -34.97396 -34.13786 -32.91928 -31.42855 -28.16500 -27.66303 -27.29574 -24.09543 -22.58517 -21.85366 -20.70896 -18.68274 -18.27756 -17.58501 -17.43293 -16.59468 -16.00790 -15.88249 -14.95104 -14.56115 -14.28176 -14.18808 -13.98855 -13.96046 -13.65592 -13.52218 -13.01136 -12.94788 -12.79092 -12.72840 -12.49791 -12.22747 -12.14857 -11.24138 -11.15043 -11.00169 -10.56512 -9.65946 -9.29365 -8.17907 -6.34890 0.07546 1.39364 1.40447 1.41812 1.53205 1.65105 2.17864 2.28007 2.45807 3.10005 3.57292 3.90871 3.97861 4.34630 4.55157 4.59034 4.67284 4.68883 4.76094 4.78586 4.84103 4.94915 4.98438 5.03292 5.18600 5.38641 5.49207 5.55750 5.60329 5.90994 6.02477 6.09834 6.62136 6.70912 7.10551 7.37128 8.87102 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038033 B = 0.006308 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.025894 B = 4437.923950 C = 4666.259904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.013 3.987 3 C -0.225 4.225 4 C -0.127 4.127 5 C -0.101 4.101 6 C 0.575 3.425 7 O -0.584 6.584 8 N -0.588 5.588 9 C 0.088 3.912 10 C 0.259 3.741 11 H 0.015 0.985 12 C -0.133 4.133 13 C -0.541 4.541 14 H 0.057 0.943 15 C 0.017 3.983 16 N -0.916 5.916 17 Si 0.969 3.031 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.271 1.271 21 O -0.162 6.162 22 H 0.100 0.900 23 H 0.087 0.913 24 H 0.117 0.883 25 H 0.188 0.812 26 H 0.156 0.844 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.022 0.978 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.880 9.200 1.454 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.039 4.039 3 C -0.244 4.244 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.364 3.636 7 O -0.468 6.468 8 N -0.317 5.317 9 C -0.054 4.054 10 C 0.157 3.843 11 H 0.033 0.967 12 C -0.191 4.191 13 C -0.580 4.580 14 H 0.076 0.924 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.196 1.196 21 O -0.059 6.059 22 H 0.119 0.881 23 H 0.106 0.894 24 H 0.136 0.864 25 H 0.205 0.795 26 H 0.173 0.827 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.240 8.949 1.450 18.599 hybrid contribution 0.844 -0.544 -0.655 1.199 sum -15.396 8.404 0.795 17.558 Atomic orbital electron populations 1.20657 0.81068 1.06032 1.05311 1.23918 0.96257 0.83873 0.99896 1.21889 0.90558 1.01383 1.10549 1.22169 1.00220 0.92296 1.00061 1.21770 0.81980 0.94675 1.16821 1.17241 0.86523 0.82255 0.77537 1.90770 1.24761 1.76736 1.54493 1.48217 1.09756 1.05552 1.68143 1.21894 0.81194 1.00281 1.02051 1.18723 0.83178 0.87431 0.94943 0.96740 1.21897 1.02443 0.99636 0.95141 1.21542 1.09562 1.15141 1.11725 0.92431 1.25741 0.94492 0.99245 0.98820 1.70020 1.12119 1.36159 1.37119 0.85353 0.77995 0.78562 0.78765 1.19205 1.20920 1.19593 1.84251 1.15386 1.35342 1.70942 0.88117 0.89429 0.86431 0.79456 0.82658 0.92858 0.90056 0.89353 0.95917 0.93137 0.90814 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.41 71.24 0.74 -0.06 16 2 C 0.01 0.28 7.31 24.97 0.18 0.46 16 3 C -0.23 -5.06 10.77 22.07 0.24 -4.82 16 4 C -0.13 -3.98 10.63 22.39 0.24 -3.74 16 5 C -0.10 -3.77 6.77 24.07 0.16 -3.61 16 6 C 0.58 27.32 7.64 86.44 0.66 27.98 16 7 O -0.58 -32.26 16.21 -4.33 -0.07 -32.33 16 8 N -0.59 -27.69 2.75 -831.55 -2.29 -29.98 16 9 C 0.09 3.22 8.83 127.77 1.13 4.35 16 10 C 0.26 14.14 2.62 44.25 0.12 14.26 16 11 H 0.01 0.94 6.90 -2.39 -0.02 0.92 16 12 C -0.13 -6.59 8.96 71.98 0.64 -5.95 16 13 C -0.54 -30.56 8.37 25.60 0.21 -30.35 16 14 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 15 C 0.02 0.94 5.30 84.65 0.45 1.39 16 16 N -0.92 -53.33 11.32 21.45 0.24 -53.09 16 17 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 O -0.16 -4.94 7.29 -5.11 -0.04 -4.98 16 22 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 26 H 0.16 4.77 8.06 -2.91 -0.02 4.74 16 27 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.08 2.90 6.44 -2.39 -0.02 2.88 16 29 H 0.09 2.80 5.40 -2.39 -0.01 2.79 16 30 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 2.26 6.67 -2.39 -0.02 2.25 16 32 H 0.07 4.01 6.07 -2.38 -0.01 3.99 16 33 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -72.05 280.32 5.76 -66.30 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.11 Total: 8.32 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 4.78 Total: -0.07 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -2.05 Total: -83.07 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.11 Total: -37.31 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.05 5.76 -66.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.031 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds