Wall clock time and date at job start Sun Mar 29 2020 21:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99327 * 2 1 4 4 H 1.48505 * 109.46812 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47212 * 299.99817 * 3 2 1 6 6 H 1.48495 * 109.47311 * 60.00182 * 3 2 1 7 7 C 1.38803 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00324 * 158.22893 * 7 2 1 9 9 N 1.36939 * 119.99797 * 338.22467 * 7 2 1 10 10 C 1.46503 * 120.00270 * 325.63197 * 9 7 2 11 11 C 1.53001 * 109.46606 * 265.96497 * 10 9 7 12 12 F 1.39895 * 109.47706 * 60.00071 * 11 10 9 13 13 F 1.39902 * 109.46884 * 180.02562 * 11 10 9 14 14 F 1.39901 * 109.47301 * 299.99663 * 11 10 9 15 15 C 1.46497 * 119.99928 * 145.62666 * 9 7 2 16 16 C 1.54268 * 110.03501 * 302.09705 * 15 9 7 17 17 C 1.54958 * 104.16171 * 95.75013 * 16 15 9 18 18 C 1.54890 * 102.77631 * 37.89346 * 17 16 15 19 19 C 1.53879 * 110.03243 * 59.31074 * 15 9 7 20 20 H 0.96991 * 120.00652 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46706 * 25.95685 * 10 9 7 22 22 H 1.08989 * 109.47159 * 145.96642 * 10 9 7 23 23 H 1.09005 * 110.02129 * 180.70159 * 15 9 7 24 24 H 1.09002 * 110.48426 * 214.40035 * 16 15 9 25 25 H 1.08998 * 110.48292 * 337.04426 * 16 15 9 26 26 H 1.08998 * 110.72569 * 279.57790 * 17 16 15 27 27 H 1.09002 * 110.92500 * 156.29587 * 17 16 15 28 28 H 1.09005 * 110.48326 * 203.40580 * 18 17 16 29 29 H 1.08999 * 110.60602 * 80.81781 * 18 17 16 30 30 H 1.08997 * 110.03293 * 359.95704 * 19 15 9 31 31 H 1.09001 * 110.02993 * 121.37889 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0325 -1.2352 -0.3474 9 7 1.3990 -2.3458 0.4389 10 6 0.4274 -2.2830 1.5336 11 6 1.1358 -2.5623 2.8607 12 9 2.1338 -1.6040 3.0674 13 9 0.2079 -2.5029 3.9061 14 9 1.7132 -3.8360 2.8222 15 6 1.7164 -3.6324 -0.1858 16 6 1.4198 -3.5729 -1.6985 17 6 2.7886 -3.2326 -2.3401 18 6 3.7841 -4.0437 -1.4740 19 6 3.2191 -3.9312 -0.0429 20 1 -0.4851 0.8399 0.0004 21 1 -0.0223 -1.2906 1.5637 22 1 -0.3501 -3.0297 1.3726 23 1 1.1320 -4.4269 0.2784 24 1 1.0609 -4.5384 -2.0551 25 1 0.6917 -2.7909 -1.9139 26 1 2.9940 -2.1646 -2.2670 27 1 2.8240 -3.5609 -3.3789 28 1 4.7806 -3.6049 -1.5263 29 1 3.8098 -5.0856 -1.7932 30 1 3.7123 -3.1186 0.4905 31 1 3.3639 -4.8706 0.4906 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070714991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:44 Heat of formation + Delta-G solvation = -151.817503 kcal Electronic energy + Delta-G solvation = -18462.281366 eV Core-core repulsion = 15135.524362 eV Total energy + Delta-G solvation = -3326.757004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.97145 -46.57291 -46.40366 -37.87120 -34.36717 -31.28567 -28.34324 -27.83358 -26.61122 -23.61343 -21.59918 -19.88434 -19.15361 -17.60076 -17.38963 -16.83203 -15.68620 -15.28348 -14.70479 -14.28651 -13.58456 -13.44198 -13.11200 -13.02719 -12.98180 -12.73633 -12.67014 -12.62890 -11.67675 -11.32641 -11.20334 -10.84546 -10.54028 -10.39650 -10.38825 -10.30577 -10.21656 -10.04802 -9.78003 -9.57564 -8.63908 -6.87147 -5.98601 -3.51921 3.30983 3.41058 3.43973 3.94520 4.36497 4.89518 5.11282 5.26901 5.29362 5.43757 5.51012 5.59343 5.77842 6.15581 6.27959 6.34270 6.36445 6.43761 6.54202 6.62430 6.67271 6.80447 7.04940 7.09276 7.15105 7.29346 7.74565 8.30532 8.95365 9.60310 10.12524 11.05526 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.016086 C = 0.009862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.060074 B = 1740.200510 C = 2838.391091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.013 3.987 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.251 4.251 8 H 0.073 0.927 9 N -0.560 5.560 10 C 0.106 3.894 11 C 0.407 3.593 12 F -0.185 7.185 13 F -0.211 7.211 14 F -0.203 7.203 15 C 0.166 3.834 16 C -0.126 4.126 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.133 4.133 20 H 0.258 0.742 21 H 0.138 0.862 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -5.867 0.393 6.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.187 4.187 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.380 4.380 8 H 0.090 0.910 9 N -0.277 5.277 10 C -0.025 4.025 11 C 0.349 3.651 12 F -0.166 7.166 13 F -0.193 7.193 14 F -0.185 7.185 15 C 0.060 3.940 16 C -0.165 4.165 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.172 4.172 20 H 0.068 0.932 21 H 0.155 0.845 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.025 -5.733 0.366 6.091 hybrid contribution 0.579 0.797 0.412 1.068 sum 2.603 -4.936 0.778 5.634 Atomic orbital electron populations 1.69889 1.05554 1.26191 1.51655 1.25120 0.95083 0.98927 0.99575 0.86291 0.79947 0.83627 0.77385 1.19896 1.21581 1.21211 1.19045 0.94938 0.84860 1.39157 0.90982 1.43836 1.47820 1.03501 1.32503 1.22322 0.91623 1.07306 0.81275 1.23497 0.78426 0.73098 0.90041 1.93106 1.63485 1.64233 1.95819 1.93056 1.66746 1.96246 1.63271 1.93049 1.86196 1.42361 1.96902 1.21184 0.93364 0.87351 0.92134 1.22676 0.97578 0.99782 0.96464 1.22448 0.95339 1.00987 0.96665 1.22284 0.98363 0.98812 0.96299 1.22591 0.98032 1.00570 0.96006 0.93160 0.84517 0.91468 0.92863 0.93690 0.90337 0.90461 0.93604 0.92934 0.93062 0.90920 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.80 11.32 55.49 0.63 -23.17 16 2 C 0.01 0.33 4.94 -17.43 -0.09 0.24 16 3 Si 0.90 20.94 29.61 -169.99 -5.03 15.90 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.29 7.11 -15.06 -0.11 -6.40 16 8 H 0.07 1.84 6.48 -52.49 -0.34 1.50 16 9 N -0.56 -12.89 2.25 -164.39 -0.37 -13.26 16 10 C 0.11 2.38 5.23 -4.04 -0.02 2.36 16 11 C 0.41 8.72 3.29 37.16 0.12 8.84 16 12 F -0.18 -4.30 16.97 2.25 0.04 -4.26 16 13 F -0.21 -4.30 17.32 2.25 0.04 -4.26 16 14 F -0.20 -4.20 16.66 2.25 0.04 -4.16 16 15 C 0.17 3.33 2.87 -66.81 -0.19 3.14 16 16 C -0.13 -2.39 6.10 -25.03 -0.15 -2.54 16 17 C -0.12 -2.06 6.53 -24.70 -0.16 -2.22 16 18 C -0.12 -1.97 6.83 -25.07 -0.17 -2.14 16 19 C -0.13 -2.46 6.15 -25.61 -0.16 -2.62 16 20 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 21 H 0.14 3.41 5.34 -51.93 -0.28 3.14 16 22 H 0.07 1.38 8.01 -51.94 -0.42 0.97 16 23 H 0.05 1.02 7.88 -51.93 -0.41 0.62 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 1.72 7.97 -51.93 -0.41 1.30 16 26 H 0.08 1.53 6.79 -51.93 -0.35 1.18 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.52 7.04 -51.93 -0.37 1.15 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 263.02 15.07 3.96 3.96 Total: -1.00 -25.84 263.02 -5.45 -31.28 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.82 Total: -0.70 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.93 Total: -1.34 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.26 Total: -36.43 kcal Atomic # 9 Polarization: -12.79 SS G_CDS: 0.11 Total: -12.68 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -25.84 -5.45 -31.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070714991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.536 kcal (2) G-P(sol) polarization free energy of solvation -25.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds