Wall clock time and date at job start Sun Mar 29 2020 21:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99327 * 2 1 4 4 H 1.48505 * 109.46812 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47212 * 299.99817 * 3 2 1 6 6 H 1.48495 * 109.47311 * 60.00182 * 3 2 1 7 7 C 1.38803 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00324 * 158.22893 * 7 2 1 9 9 N 1.36939 * 119.99797 * 338.22467 * 7 2 1 10 10 C 1.46503 * 120.00270 * 325.63197 * 9 7 2 11 11 C 1.53001 * 109.46606 * 265.96497 * 10 9 7 12 12 F 1.39895 * 109.47706 * 60.00071 * 11 10 9 13 13 F 1.39902 * 109.46884 * 180.02562 * 11 10 9 14 14 F 1.39901 * 109.47301 * 299.99663 * 11 10 9 15 15 C 1.46497 * 119.99928 * 145.62666 * 9 7 2 16 16 C 1.54268 * 110.03501 * 302.09705 * 15 9 7 17 17 C 1.54958 * 104.16171 * 95.75013 * 16 15 9 18 18 C 1.54890 * 102.77631 * 37.89346 * 17 16 15 19 19 C 1.53879 * 110.03243 * 59.31074 * 15 9 7 20 20 H 0.96991 * 120.00652 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46706 * 25.95685 * 10 9 7 22 22 H 1.08989 * 109.47159 * 145.96642 * 10 9 7 23 23 H 1.09005 * 110.02129 * 180.70159 * 15 9 7 24 24 H 1.09002 * 110.48426 * 214.40035 * 16 15 9 25 25 H 1.08998 * 110.48292 * 337.04426 * 16 15 9 26 26 H 1.08998 * 110.72569 * 279.57790 * 17 16 15 27 27 H 1.09002 * 110.92500 * 156.29587 * 17 16 15 28 28 H 1.09005 * 110.48326 * 203.40580 * 18 17 16 29 29 H 1.08999 * 110.60602 * 80.81781 * 18 17 16 30 30 H 1.08997 * 110.03293 * 359.95704 * 19 15 9 31 31 H 1.09001 * 110.02993 * 121.37889 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0325 -1.2352 -0.3474 9 7 1.3990 -2.3458 0.4389 10 6 0.4274 -2.2830 1.5336 11 6 1.1358 -2.5623 2.8607 12 9 2.1338 -1.6040 3.0674 13 9 0.2079 -2.5029 3.9061 14 9 1.7132 -3.8360 2.8222 15 6 1.7164 -3.6324 -0.1858 16 6 1.4198 -3.5729 -1.6985 17 6 2.7886 -3.2326 -2.3401 18 6 3.7841 -4.0437 -1.4740 19 6 3.2191 -3.9312 -0.0429 20 1 -0.4851 0.8399 0.0004 21 1 -0.0223 -1.2906 1.5637 22 1 -0.3501 -3.0297 1.3726 23 1 1.1320 -4.4269 0.2784 24 1 1.0609 -4.5384 -2.0551 25 1 0.6917 -2.7909 -1.9139 26 1 2.9940 -2.1646 -2.2670 27 1 2.8240 -3.5609 -3.3789 28 1 4.7806 -3.6049 -1.5263 29 1 3.8098 -5.0856 -1.7932 30 1 3.7123 -3.1186 0.4905 31 1 3.3639 -4.8706 0.4906 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070714991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:44 Heat of formation + Delta-G solvation = -164.207073 kcal Electronic energy + Delta-G solvation = -18462.818618 eV Core-core repulsion = 15135.524362 eV Total energy + Delta-G solvation = -3327.294257 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.71214 -48.27336 -48.19010 -39.45538 -36.08621 -33.17099 -30.02577 -29.29680 -28.34575 -25.41318 -23.36760 -21.29109 -20.81570 -19.35008 -19.14223 -18.61478 -17.45774 -16.95089 -16.40161 -16.00090 -15.27533 -15.15151 -14.82801 -14.71797 -14.67950 -14.44747 -14.42653 -14.18520 -13.40576 -13.14652 -13.00093 -12.70126 -12.19982 -12.16481 -12.05838 -11.77895 -11.70723 -11.63252 -11.35397 -11.10697 -10.56768 -8.73800 -7.93395 -5.47880 1.43261 1.50058 1.57143 2.18419 2.48226 3.09287 3.27068 3.49913 3.52595 3.87978 3.99316 4.08439 4.32211 4.62105 4.72560 4.80570 4.94713 4.99986 5.04476 5.21492 5.25891 5.28670 5.34026 5.53336 5.63683 5.69729 5.83355 6.41891 7.04306 7.72403 8.22023 9.08533 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.016086 C = 0.009862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.060074 B = 1740.200510 C = 2838.391091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.030 4.030 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.065 0.935 9 N -0.571 5.571 10 C 0.106 3.894 11 C 0.415 3.585 12 F -0.197 7.197 13 F -0.203 7.203 14 F -0.195 7.195 15 C 0.156 3.844 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.128 4.128 20 H 0.255 0.745 21 H 0.114 0.886 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -7.279 0.015 7.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.227 4.227 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.083 0.917 9 N -0.288 5.288 10 C -0.025 4.025 11 C 0.358 3.642 12 F -0.179 7.179 13 F -0.185 7.185 14 F -0.177 7.177 15 C 0.051 3.949 16 C -0.160 4.160 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.168 4.168 20 H 0.064 0.936 21 H 0.131 0.869 22 H 0.102 0.898 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.790 -7.162 -0.014 7.687 hybrid contribution 0.337 1.162 0.547 1.327 sum 3.127 -6.001 0.533 6.787 Atomic orbital electron populations 1.69976 1.06328 1.26260 1.53310 1.25615 0.95632 1.00966 1.00470 0.85580 0.79171 0.81190 0.76826 1.19575 1.21625 1.21875 1.19076 0.94555 0.85703 1.37780 0.91716 1.43988 1.47730 1.04089 1.33017 1.22201 0.91974 1.06569 0.81749 1.23181 0.78117 0.73107 0.89828 1.93084 1.64040 1.64867 1.95873 1.93070 1.66389 1.96219 1.62827 1.93059 1.86069 1.41698 1.96881 1.21436 0.94598 0.86139 0.92743 1.22594 0.97457 0.99989 0.95924 1.22397 0.94918 0.99547 0.98403 1.22253 0.98028 1.00284 0.94269 1.22511 0.96560 1.00224 0.97469 0.93560 0.86898 0.89791 0.91875 0.90881 0.93939 0.93398 0.91118 0.92260 0.90205 0.93727 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.59 11.32 21.65 0.25 -49.34 16 2 C -0.03 -1.56 4.94 84.86 0.42 -1.14 16 3 Si 0.94 43.34 29.61 68.60 2.03 45.37 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 7 C -0.24 -12.13 7.11 84.03 0.60 -11.53 16 8 H 0.07 3.32 6.48 -2.91 -0.02 3.30 16 9 N -0.57 -26.02 2.25 -674.02 -1.51 -27.54 16 10 C 0.11 4.72 5.23 86.38 0.45 5.17 16 11 C 0.42 17.37 3.29 71.98 0.24 17.60 16 12 F -0.20 -9.06 16.97 44.97 0.76 -8.30 16 13 F -0.20 -8.01 17.32 44.97 0.78 -7.23 16 14 F -0.20 -7.71 16.66 44.97 0.75 -6.96 16 15 C 0.16 6.00 2.87 45.72 0.13 6.14 16 16 C -0.12 -4.36 6.10 31.69 0.19 -4.17 16 17 C -0.12 -3.82 6.53 31.91 0.21 -3.61 16 18 C -0.11 -3.28 6.83 31.67 0.22 -3.07 16 19 C -0.13 -4.48 6.15 31.32 0.19 -4.29 16 20 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 21 H 0.11 5.69 5.34 -2.39 -0.01 5.68 16 22 H 0.08 3.38 8.01 -2.39 -0.02 3.36 16 23 H 0.06 2.28 7.88 -2.38 -0.02 2.26 16 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.04 1.84 7.97 -2.39 -0.02 1.82 16 26 H 0.05 1.86 6.79 -2.39 -0.02 1.85 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.80 7.04 -2.39 -0.02 1.79 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -54.08 263.02 6.83 -47.24 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.13 Total: 5.66 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 2.65 Total: 1.10 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -1.27 Total: -76.88 kcal Atomic # 9 Polarization: -24.78 SS G_CDS: 2.29 Total: -22.49 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -54.08 6.83 -47.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070714991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.963 kcal (2) G-P(sol) polarization free energy of solvation -54.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds