Wall clock time and date at job start Sun Mar 29 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33648 * 125.80548 * 2 1 4 4 C 1.34214 * 110.91281 * 179.73475 * 3 2 1 5 5 C 1.34177 * 109.12202 * 0.45134 * 4 3 2 6 6 C 1.36414 * 125.79801 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19599 * 359.97438 * 6 2 1 8 8 O 1.21616 * 119.99610 * 359.97044 * 7 6 2 9 9 N 1.34783 * 120.00408 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.99950 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46968 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47219 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47200 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99973 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00128 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99896 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00128 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47033 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47204 * 120.00254 * 17 15 13 20 20 H 1.48497 * 109.47354 * 240.00225 * 17 15 13 21 21 H 1.09001 * 109.46861 * 269.99620 * 1 2 3 22 22 H 1.08999 * 109.47154 * 29.99168 * 1 2 3 23 23 H 1.08995 * 109.47634 * 149.99949 * 1 2 3 24 24 H 1.08002 * 125.43915 * 180.28813 * 4 3 2 25 25 H 1.08002 * 127.02647 * 179.84063 * 5 4 3 26 26 H 0.97001 * 119.99484 * 359.97438 * 9 7 6 27 27 H 1.08998 * 109.47320 * 299.99222 * 10 9 7 28 28 H 1.08997 * 109.47682 * 59.99515 * 10 9 7 29 29 H 1.09007 * 109.46371 * 299.99508 * 11 10 9 30 30 H 1.08997 * 109.47254 * 59.99328 * 11 10 9 31 31 H 1.09002 * 109.47018 * 299.99862 * 12 11 10 32 32 H 1.08997 * 109.47519 * 59.99537 * 12 11 10 33 33 H 0.97000 * 119.99960 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0002 6 6 2.3049 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0006 8 8 0.6889 -2.7891 0.0003 9 7 2.7929 -3.5016 -0.0016 10 6 2.3644 -4.9025 -0.0023 11 6 3.5946 -5.8122 -0.0041 12 6 3.1471 -7.2752 -0.0041 13 6 4.3588 -8.1712 -0.0065 14 1 5.3491 -7.7402 -0.0083 15 6 4.2033 -9.5411 -0.0065 16 7 2.9973 -10.0660 -0.0048 17 14 5.7053 -10.6517 -0.0102 18 1 6.9356 -9.8203 -0.0122 19 1 5.6898 -11.5092 1.2022 20 1 5.6844 -11.5086 -1.2228 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5137 23 1 -0.3634 -0.8899 -0.5138 24 1 4.4172 1.4284 0.0115 25 1 4.5928 -1.1841 -0.0002 26 1 3.7381 -3.2835 -0.0027 27 1 1.7673 -5.1002 0.8879 28 1 1.7662 -5.0991 -0.8920 29 1 4.1914 -5.6143 -0.8946 30 1 4.1931 -5.6156 0.8854 31 1 2.5505 -7.4727 0.8865 32 1 2.5484 -7.4720 -0.8934 33 1 2.8879 -11.0298 -0.0052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:37 Heat of formation + Delta-G solvation = -45.995423 kcal Electronic energy + Delta-G solvation = -15824.010308 eV Core-core repulsion = 13043.698834 eV Total energy + Delta-G solvation = -2780.311474 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.70603 -39.18040 -35.42139 -33.44363 -33.03005 -32.02391 -31.06566 -27.50200 -26.40299 -23.82001 -22.52199 -20.95964 -20.68312 -19.50135 -17.88010 -16.49335 -16.41975 -15.78519 -15.44184 -15.14079 -14.51652 -14.34096 -13.74654 -13.41724 -13.19851 -13.05594 -12.97812 -12.28207 -11.92141 -11.78689 -11.71973 -10.92280 -10.73330 -10.57180 -9.96297 -9.94064 -9.86602 -9.39956 -9.10719 -8.87011 -8.61166 -8.37543 -6.02008 -4.05033 1.28697 1.90330 2.64686 3.29917 3.37314 3.40596 3.46179 3.49010 4.35519 4.44347 4.71887 4.78413 5.12137 5.33887 5.35347 5.38159 5.49867 5.67834 5.76761 5.78802 6.00944 6.11869 6.17642 6.50849 6.60457 6.81921 6.88435 7.00603 7.63793 7.75543 7.76236 7.96929 8.37164 8.42782 9.01858 9.59232 11.09347 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.054579 B = 0.003802 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.896065 B = 7363.421850 C = 7845.266648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.073 3.927 3 O -0.179 6.179 4 C -0.043 4.043 5 C -0.187 4.187 6 C -0.243 4.243 7 C 0.583 3.417 8 O -0.547 6.547 9 N -0.718 5.718 10 C 0.117 3.883 11 C -0.121 4.121 12 C 0.023 3.977 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.207 0.793 25 H 0.157 0.843 26 H 0.398 0.602 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 21.495 -0.005 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.020 3.980 3 O -0.075 6.075 4 C -0.108 4.108 5 C -0.207 4.207 6 C -0.247 4.247 7 C 0.370 3.630 8 O -0.427 6.427 9 N -0.368 5.368 10 C -0.005 4.005 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.128 0.872 24 H 0.224 0.776 25 H 0.175 0.825 26 H 0.232 0.768 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.837 21.385 -0.006 21.401 hybrid contribution 1.634 -0.777 0.016 1.810 sum 0.797 20.608 0.010 20.624 Atomic orbital electron populations 1.20610 0.83735 1.05040 1.04405 1.22830 0.94139 0.83086 0.97922 1.83753 1.17162 1.35064 1.71530 1.23825 0.83538 0.96378 1.07096 1.22921 0.96810 0.94579 1.06346 1.21287 0.93273 0.94203 1.15932 1.17220 0.85674 0.83690 0.76381 1.90745 1.16619 1.84119 1.51197 1.46003 1.09447 1.06949 1.74366 1.21665 0.98790 0.77990 1.02089 1.21893 0.95211 0.97912 1.00882 1.19038 0.96922 0.87791 0.97698 1.21243 0.92838 0.91132 1.50794 0.92596 1.25034 0.95829 0.98345 0.95283 1.69979 1.21084 1.11549 1.50667 0.86525 0.83102 0.80692 0.77603 1.19764 1.20998 1.20993 0.89372 0.90550 0.87167 0.77631 0.82490 0.76815 0.91638 0.91648 0.92722 0.92725 0.96226 0.96231 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.89 36.01 0.36 -0.46 16 2 C 0.07 0.88 7.37 -34.97 -0.26 0.62 16 3 O -0.18 -1.93 10.52 7.67 0.08 -1.85 16 4 C -0.04 -0.37 12.03 29.30 0.35 -0.02 16 5 C -0.19 -1.92 10.60 -37.45 -0.40 -2.32 16 6 C -0.24 -3.23 6.31 -103.27 -0.65 -3.88 16 7 C 0.58 9.38 7.81 -12.54 -0.10 9.28 16 8 O -0.55 -10.31 14.84 5.26 0.08 -10.23 16 9 N -0.72 -10.98 5.55 -61.40 -0.34 -11.32 16 10 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 11 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 12 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 13 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.11 1.29 6.48 -51.93 -0.34 0.96 16 24 H 0.21 0.92 8.06 -52.49 -0.42 0.49 16 25 H 0.16 1.25 7.74 -52.49 -0.41 0.84 16 26 H 0.40 5.03 7.64 -40.82 -0.31 4.72 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 290.67 15.07 4.38 4.38 Total: -1.00 -32.96 290.67 -5.90 -38.85 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.40 Total: 0.01 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.41 Total: -10.18 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.40 Total: -37.46 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.16 Total: -12.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.96 -5.90 -38.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.142 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds