Wall clock time and date at job start Sun Mar 29 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33648 * 125.80548 * 2 1 4 4 C 1.34214 * 110.91281 * 179.73475 * 3 2 1 5 5 C 1.34177 * 109.12202 * 0.45134 * 4 3 2 6 6 C 1.36414 * 125.79801 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19599 * 359.97438 * 6 2 1 8 8 O 1.21616 * 119.99610 * 359.97044 * 7 6 2 9 9 N 1.34783 * 120.00408 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.99950 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46968 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47219 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47200 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99973 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00128 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99896 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00128 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47033 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47204 * 120.00254 * 17 15 13 20 20 H 1.48497 * 109.47354 * 240.00225 * 17 15 13 21 21 H 1.09001 * 109.46861 * 269.99620 * 1 2 3 22 22 H 1.08999 * 109.47154 * 29.99168 * 1 2 3 23 23 H 1.08995 * 109.47634 * 149.99949 * 1 2 3 24 24 H 1.08002 * 125.43915 * 180.28813 * 4 3 2 25 25 H 1.08002 * 127.02647 * 179.84063 * 5 4 3 26 26 H 0.97001 * 119.99484 * 359.97438 * 9 7 6 27 27 H 1.08998 * 109.47320 * 299.99222 * 10 9 7 28 28 H 1.08997 * 109.47682 * 59.99515 * 10 9 7 29 29 H 1.09007 * 109.46371 * 299.99508 * 11 10 9 30 30 H 1.08997 * 109.47254 * 59.99328 * 11 10 9 31 31 H 1.09002 * 109.47018 * 299.99862 * 12 11 10 32 32 H 1.08997 * 109.47519 * 59.99537 * 12 11 10 33 33 H 0.97000 * 119.99960 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0002 6 6 2.3049 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0006 8 8 0.6889 -2.7891 0.0003 9 7 2.7929 -3.5016 -0.0016 10 6 2.3644 -4.9025 -0.0023 11 6 3.5946 -5.8122 -0.0041 12 6 3.1471 -7.2752 -0.0041 13 6 4.3588 -8.1712 -0.0065 14 1 5.3491 -7.7402 -0.0083 15 6 4.2033 -9.5411 -0.0065 16 7 2.9973 -10.0660 -0.0048 17 14 5.7053 -10.6517 -0.0102 18 1 6.9356 -9.8203 -0.0122 19 1 5.6898 -11.5092 1.2022 20 1 5.6844 -11.5086 -1.2228 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5137 23 1 -0.3634 -0.8899 -0.5138 24 1 4.4172 1.4284 0.0115 25 1 4.5928 -1.1841 -0.0002 26 1 3.7381 -3.2835 -0.0027 27 1 1.7673 -5.1002 0.8879 28 1 1.7662 -5.0991 -0.8920 29 1 4.1914 -5.6143 -0.8946 30 1 4.1931 -5.6156 0.8854 31 1 2.5505 -7.4727 0.8865 32 1 2.5484 -7.4720 -0.8934 33 1 2.8879 -11.0298 -0.0052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:37 Heat of formation + Delta-G solvation = -68.192627 kcal Electronic energy + Delta-G solvation = -15824.972851 eV Core-core repulsion = 13043.698834 eV Total energy + Delta-G solvation = -2781.274017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.52838 -40.47329 -36.99997 -35.23058 -34.09607 -33.06929 -32.59031 -28.96959 -27.64757 -25.39764 -23.78881 -22.37466 -21.91734 -20.66024 -18.85023 -18.49325 -17.35354 -16.98394 -16.65069 -16.58782 -16.41847 -15.39678 -15.26278 -14.50160 -14.28445 -14.05631 -13.84268 -13.74889 -13.71990 -13.51379 -12.77974 -12.67909 -12.56120 -12.34744 -11.69514 -11.61480 -11.24191 -10.97939 -10.84955 -10.56262 -10.13633 -9.51942 -8.19730 -6.31284 0.31944 1.13888 1.42102 1.42188 1.55528 1.83712 2.27000 2.30338 2.43259 3.14158 3.62363 3.78897 3.90234 4.16393 4.19662 4.36920 4.53346 4.61437 4.64899 4.75305 4.87083 4.92677 4.99857 5.15340 5.21596 5.37256 5.43868 5.52128 5.69728 5.83710 6.03924 6.21928 6.55645 6.86254 7.19349 7.38433 8.92672 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.054579 B = 0.003802 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.896065 B = 7363.421850 C = 7845.266648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.069 3.931 3 O -0.180 6.180 4 C -0.027 4.027 5 C -0.200 4.200 6 C -0.273 4.273 7 C 0.579 3.421 8 O -0.584 6.584 9 N -0.708 5.708 10 C 0.131 3.869 11 C -0.101 4.101 12 C 0.023 3.977 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.280 1.280 21 H 0.096 0.904 22 H 0.102 0.898 23 H 0.088 0.912 24 H 0.252 0.748 25 H 0.178 0.822 26 H 0.413 0.587 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.068 0.932 31 H -0.007 1.007 32 H -0.007 1.007 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 23.225 0.024 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.015 3.985 3 O -0.076 6.076 4 C -0.092 4.092 5 C -0.219 4.219 6 C -0.277 4.277 7 C 0.369 3.631 8 O -0.466 6.466 9 N -0.359 5.359 10 C 0.007 3.993 11 C -0.139 4.139 12 C -0.015 4.015 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.182 1.182 19 H -0.206 1.206 20 H -0.206 1.206 21 H 0.114 0.886 22 H 0.120 0.880 23 H 0.107 0.893 24 H 0.268 0.732 25 H 0.196 0.804 26 H 0.250 0.750 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.548 23.148 0.023 23.200 hybrid contribution 0.877 -1.247 0.006 1.524 sum 2.425 21.901 0.029 22.035 Atomic orbital electron populations 1.20619 0.83014 1.05203 1.04946 1.23091 0.94920 0.83217 0.97232 1.83787 1.18107 1.34460 1.71245 1.24713 0.83450 0.96707 1.04303 1.23191 0.96022 0.95486 1.07206 1.21227 0.95555 0.92669 1.18270 1.17665 0.85144 0.84933 0.75387 1.90723 1.18160 1.84882 1.52846 1.45765 1.10339 1.05557 1.74273 1.21268 0.97676 0.79505 1.00846 1.21600 0.95835 0.94382 1.02117 1.18952 0.95847 0.91529 0.95155 1.21707 0.93830 0.91916 1.50403 0.91530 1.26031 0.99092 1.00243 0.94756 1.70121 1.23646 1.12058 1.51734 0.85350 0.79338 0.78420 0.77631 1.18184 1.20564 1.20558 0.88601 0.87977 0.89339 0.73181 0.80419 0.75011 0.93021 0.93026 0.91369 0.91373 0.98868 0.98873 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.89 71.24 0.70 -0.89 16 2 C 0.07 1.58 7.37 25.26 0.19 1.76 16 3 O -0.18 -3.42 10.52 4.52 0.05 -3.37 16 4 C -0.03 -0.37 12.03 66.89 0.80 0.43 16 5 C -0.20 -3.57 10.60 23.65 0.25 -3.32 16 6 C -0.27 -7.00 6.31 -18.99 -0.12 -7.12 16 7 C 0.58 18.73 7.81 86.65 0.68 19.41 16 8 O -0.58 -22.75 14.84 -4.08 -0.06 -22.81 16 9 N -0.71 -21.34 5.55 -466.42 -2.59 -23.93 16 10 C 0.13 4.79 5.67 86.38 0.49 5.28 16 11 C -0.10 -3.98 5.27 30.59 0.16 -3.82 16 12 C 0.02 1.20 4.97 29.85 0.15 1.35 16 13 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 16 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 17 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.09 2.15 6.48 -2.39 -0.02 2.13 16 24 H 0.25 0.92 8.06 -2.91 -0.02 0.90 16 25 H 0.18 2.26 7.74 -2.91 -0.02 2.24 16 26 H 0.41 9.77 7.64 -92.71 -0.71 9.06 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -72.46 290.67 4.11 -68.35 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.40 Total: 9.66 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 4.00 Total: -16.73 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.30 Total: -80.96 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.01 Total: -26.18 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.46 4.11 -68.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.155 kcal (2) G-P(sol) polarization free energy of solvation -72.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds