Wall clock time and date at job start Sun Mar 29 2020 22:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35135 * 125.61301 * 2 1 4 4 C 1.40362 * 107.10939 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.71195 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98797 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99639 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00116 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47136 * 90.00100 * 16 14 12 18 18 H 1.48499 * 109.47548 * 209.99879 * 16 14 12 19 19 H 1.48499 * 109.47078 * 330.00388 * 16 14 12 20 20 O 1.33922 * 125.61589 * 180.33225 * 2 1 3 21 21 H 1.08994 * 109.47475 * 89.99697 * 1 2 3 22 22 H 1.08999 * 109.47428 * 209.99694 * 1 2 3 23 23 H 1.09002 * 109.46896 * 329.99377 * 1 2 3 24 24 H 1.07993 * 126.44513 * 0.03823 * 3 2 1 25 25 H 1.08007 * 126.64372 * 179.97438 * 4 3 2 26 26 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 27 27 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 28 28 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 29 29 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 30 30 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 31 31 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 32 32 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 33 33 H 0.97000 * 120.00572 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9455 -0.0032 9 6 5.7168 -3.8429 -0.0107 10 6 5.2361 -5.2955 -0.0164 11 6 6.4454 -6.2328 -0.0249 12 6 5.9719 -7.6635 -0.0299 13 1 4.9143 -7.8824 -0.0277 14 6 6.8889 -8.6931 -0.0373 15 7 8.1768 -8.4267 -0.0395 16 14 6.3021 -10.4665 -0.0442 17 1 6.1429 -10.9297 -1.4461 18 1 7.2995 -11.3208 0.6490 19 1 4.9973 -10.5589 0.6588 20 8 2.2869 -1.0887 -0.0063 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.9612 2.1260 0.0006 25 1 4.5113 1.2704 -0.0011 26 1 3.6609 -3.3123 -0.0029 27 1 6.3164 -3.6552 -0.9015 28 1 6.3212 -3.6638 0.8785 29 1 4.6366 -5.4833 0.8743 30 1 4.6317 -5.4748 -0.9057 31 1 7.0445 -6.0449 -0.9158 32 1 7.0501 -6.0537 0.8641 33 1 8.8219 -9.1510 -0.0443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940634.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:39 Heat of formation + Delta-G solvation = -44.772152 kcal Electronic energy + Delta-G solvation = -15705.731814 eV Core-core repulsion = 12925.473385 eV Total energy + Delta-G solvation = -2780.258429 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.84817 -39.29128 -35.52988 -33.63870 -33.19451 -32.22602 -31.19667 -27.93842 -26.31780 -23.48098 -21.97440 -21.68906 -20.69350 -20.03618 -18.13967 -16.64534 -16.44205 -15.73252 -15.39656 -15.18929 -14.46088 -14.06648 -13.85309 -13.53694 -13.25495 -13.16755 -13.14447 -12.30001 -12.20961 -11.85187 -11.76769 -10.91108 -10.76591 -10.62163 -10.26626 -10.19888 -9.88534 -9.44934 -9.13335 -8.98046 -8.58310 -8.37572 -6.02156 -4.05322 0.95042 2.15716 2.47427 3.22475 3.30883 3.32647 3.37416 3.40610 4.38765 4.44314 4.72932 4.75519 5.03598 5.07582 5.30663 5.33667 5.47741 5.60564 5.69152 5.74274 5.79761 6.12823 6.19074 6.36374 6.57155 6.66637 6.82418 6.97368 7.60181 7.62809 7.75055 7.96361 8.18201 8.37642 9.01244 9.58927 11.09158 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045346 B = 0.003789 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.329982 B = 7387.892718 C = 7974.162608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 C -0.224 4.224 4 C -0.123 4.123 5 C -0.074 4.074 6 C 0.596 3.404 7 O -0.524 6.524 8 N -0.713 5.713 9 C 0.115 3.885 10 C -0.122 4.122 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.162 6.162 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.155 0.845 25 H 0.160 0.840 26 H 0.403 0.597 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 17.235 0.088 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 C -0.243 4.243 4 C -0.143 4.143 5 C -0.126 4.126 6 C 0.381 3.619 7 O -0.403 6.403 8 N -0.363 5.363 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.058 6.058 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.172 0.828 25 H 0.178 0.822 26 H 0.238 0.762 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.193 17.123 0.092 22.240 hybrid contribution -0.577 -0.979 -0.024 1.136 sum -14.770 16.144 0.069 21.881 Atomic orbital electron populations 1.20404 0.84617 1.04468 1.03933 1.22814 0.94299 0.84171 1.02609 1.21576 0.92392 0.99723 1.10644 1.21944 0.98590 0.93012 1.00799 1.22240 0.81831 0.94808 1.13691 1.16601 0.85910 0.81874 0.77529 1.90881 1.21996 1.76203 1.51191 1.46157 1.11576 1.05315 1.73214 1.21767 0.86928 0.89657 1.02404 1.21908 1.01544 0.91439 1.01065 1.19034 0.91750 0.92868 0.97731 1.21203 0.92861 0.91080 1.50972 0.92622 1.25029 0.94897 0.99284 0.95257 1.69962 1.00528 1.32252 1.50540 0.86573 0.78486 0.84700 0.78105 1.20652 1.21201 1.19883 1.84011 1.16079 1.34952 1.70757 0.89615 0.90100 0.89024 0.82751 0.82243 0.76215 0.91298 0.91285 0.92585 0.92599 0.96196 0.96184 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.41 36.01 0.37 -0.05 16 2 C 0.01 0.13 7.31 -35.41 -0.26 -0.13 16 3 C -0.22 -2.18 10.77 -39.89 -0.43 -2.61 16 4 C -0.12 -1.50 10.62 -39.39 -0.42 -1.92 16 5 C -0.07 -1.03 7.13 -36.80 -0.26 -1.29 16 6 C 0.60 9.78 7.79 -12.86 -0.10 9.68 16 7 O -0.52 -10.20 16.86 5.20 0.09 -10.11 16 8 N -0.71 -11.11 5.55 -61.62 -0.34 -11.45 16 9 C 0.11 2.05 5.67 -4.04 -0.02 2.03 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 O -0.16 -2.01 10.40 5.02 0.05 -1.96 16 21 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 25 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 26 H 0.40 5.40 8.23 -40.82 -0.34 5.07 16 27 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 295.15 15.07 4.45 4.45 Total: -1.00 -32.57 295.15 -6.37 -38.95 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.53 Total: -0.44 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.81 Total: -9.81 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.39 Total: -37.59 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.14 Total: -12.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.57 -6.37 -38.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940634.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.824 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds