Wall clock time and date at job start Sun Mar 29 2020 22:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35135 * 125.61301 * 2 1 4 4 C 1.40362 * 107.10939 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.71195 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98797 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99639 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00116 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47136 * 90.00100 * 16 14 12 18 18 H 1.48499 * 109.47548 * 209.99879 * 16 14 12 19 19 H 1.48499 * 109.47078 * 330.00388 * 16 14 12 20 20 O 1.33922 * 125.61589 * 180.33225 * 2 1 3 21 21 H 1.08994 * 109.47475 * 89.99697 * 1 2 3 22 22 H 1.08999 * 109.47428 * 209.99694 * 1 2 3 23 23 H 1.09002 * 109.46896 * 329.99377 * 1 2 3 24 24 H 1.07993 * 126.44513 * 0.03823 * 3 2 1 25 25 H 1.08007 * 126.64372 * 179.97438 * 4 3 2 26 26 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 27 27 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 28 28 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 29 29 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 30 30 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 31 31 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 32 32 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 33 33 H 0.97000 * 120.00572 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9455 -0.0032 9 6 5.7168 -3.8429 -0.0107 10 6 5.2361 -5.2955 -0.0164 11 6 6.4454 -6.2328 -0.0249 12 6 5.9719 -7.6635 -0.0299 13 1 4.9143 -7.8824 -0.0277 14 6 6.8889 -8.6931 -0.0373 15 7 8.1768 -8.4267 -0.0395 16 14 6.3021 -10.4665 -0.0442 17 1 6.1429 -10.9297 -1.4461 18 1 7.2995 -11.3208 0.6490 19 1 4.9973 -10.5589 0.6588 20 8 2.2869 -1.0887 -0.0063 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.9612 2.1260 0.0006 25 1 4.5113 1.2704 -0.0011 26 1 3.6609 -3.3123 -0.0029 27 1 6.3164 -3.6552 -0.9015 28 1 6.3212 -3.6638 0.8785 29 1 4.6366 -5.4833 0.8743 30 1 4.6317 -5.4748 -0.9057 31 1 7.0445 -6.0449 -0.9158 32 1 7.0501 -6.0537 0.8641 33 1 8.8219 -9.1510 -0.0443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940634.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:39 Heat of formation + Delta-G solvation = -66.569717 kcal Electronic energy + Delta-G solvation = -15706.677027 eV Core-core repulsion = 12925.473385 eV Total energy + Delta-G solvation = -2781.203643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.72845 -40.61174 -37.09826 -35.30056 -34.28535 -33.28229 -32.71558 -29.26783 -27.70688 -25.14914 -23.13162 -22.64329 -22.32905 -21.15634 -19.33651 -18.51341 -17.59475 -17.09640 -16.59900 -16.46983 -16.36135 -15.33023 -15.25716 -14.34722 -14.14808 -14.03818 -13.96859 -13.76930 -13.75064 -13.53194 -12.77892 -12.76258 -12.58830 -12.40552 -11.79307 -11.71701 -11.36028 -11.16250 -11.06904 -10.55949 -10.32994 -9.48379 -8.20065 -6.31692 -0.04105 1.32998 1.41630 1.43087 1.53733 1.55259 2.04530 2.14205 2.42326 3.13706 3.58462 3.87840 3.93650 4.10980 4.16286 4.50258 4.53667 4.58622 4.72638 4.74581 4.87336 4.89761 4.94506 5.13221 5.13975 5.26790 5.45860 5.50063 5.68640 5.82926 5.83277 6.21243 6.38996 6.85362 6.93751 7.37901 8.92087 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045346 B = 0.003789 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.329982 B = 7387.892718 C = 7974.162608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 C -0.229 4.229 4 C -0.118 4.118 5 C -0.111 4.111 6 C 0.596 3.404 7 O -0.565 6.565 8 N -0.705 5.705 9 C 0.128 3.872 10 C -0.103 4.103 11 C 0.024 3.976 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.260 1.260 20 O -0.172 6.172 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.117 0.883 24 H 0.187 0.813 25 H 0.162 0.838 26 H 0.416 0.584 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.068 0.932 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.163 17.669 0.085 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.028 4.028 3 C -0.248 4.248 4 C -0.139 4.139 5 C -0.162 4.162 6 C 0.384 3.616 7 O -0.447 6.447 8 N -0.355 5.355 9 C 0.004 3.996 10 C -0.141 4.141 11 C -0.014 4.014 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.184 1.184 20 O -0.069 6.069 21 H 0.120 0.880 22 H 0.104 0.896 23 H 0.136 0.864 24 H 0.205 0.795 25 H 0.180 0.820 26 H 0.252 0.748 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.289 17.559 0.089 24.642 hybrid contribution 0.288 -1.006 -0.025 1.046 sum -17.002 16.554 0.064 23.730 Atomic orbital electron populations 1.20683 0.81273 1.06044 1.05425 1.23791 0.96009 0.83430 0.99586 1.21953 0.90931 1.01416 1.10471 1.22247 1.00162 0.92499 0.99005 1.21715 0.81991 0.94744 1.17792 1.16873 0.86346 0.81970 0.76434 1.90845 1.23830 1.76866 1.53144 1.45925 1.11370 1.05041 1.73163 1.21394 0.87538 0.89178 1.01459 1.21617 0.99184 0.91081 1.02182 1.18941 0.93379 0.93770 0.95286 1.21677 0.93483 0.92292 1.50592 0.91599 1.26024 0.94943 1.04384 0.94730 1.70107 1.01942 1.33829 1.51615 0.85402 0.78354 0.78535 0.78482 1.19790 1.20983 1.18448 1.83995 1.15513 1.36192 1.71168 0.87953 0.89551 0.86416 0.79524 0.82031 0.74768 0.92378 0.92360 0.91376 0.91376 0.98723 0.98712 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.41 71.24 0.74 0.20 16 2 C 0.02 0.40 7.31 24.97 0.18 0.59 16 3 C -0.23 -3.83 10.77 22.07 0.24 -3.59 16 4 C -0.12 -2.78 10.62 22.39 0.24 -2.54 16 5 C -0.11 -3.06 7.13 24.07 0.17 -2.89 16 6 C 0.60 19.95 7.79 86.44 0.67 20.62 16 7 O -0.57 -22.81 16.86 -4.33 -0.07 -22.88 16 8 N -0.70 -22.06 5.55 -467.09 -2.59 -24.65 16 9 C 0.13 4.69 5.67 86.38 0.49 5.18 16 10 C -0.10 -4.07 5.27 30.59 0.16 -3.91 16 11 C 0.02 1.26 4.97 29.85 0.15 1.41 16 12 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 13 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 16 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 O -0.17 -4.01 10.40 -4.96 -0.05 -4.06 16 21 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 22 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 24 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 25 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 26 H 0.42 10.84 8.23 -92.71 -0.76 10.08 16 27 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 30 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 33 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -71.66 295.15 3.68 -67.99 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.34 Total: 9.59 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 3.74 Total: -14.95 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -2.31 Total: -81.71 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.12 Total: -26.94 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -71.66 3.68 -67.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940634.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.418 kcal (2) G-P(sol) polarization free energy of solvation -71.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds