Wall clock time and date at job start Sun Mar 29 2020 21:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48493 * 109.47204 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47010 * 120.00095 * 3 2 1 6 6 H 1.48505 * 109.46962 * 239.99813 * 3 2 1 7 7 C 1.39077 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99514 * 199.13509 * 7 2 1 9 9 N 1.36813 * 119.99858 * 19.13898 * 7 2 1 10 10 C 1.34774 * 120.00314 * 38.29720 * 9 7 2 11 11 O 1.21645 * 119.99809 * 4.08972 * 10 9 7 12 12 C 1.47330 * 119.99880 * 184.09209 * 10 9 7 13 13 C 1.32562 * 118.48908 * 173.89933 * 12 10 9 14 14 C 1.50461 * 122.27027 * 180.35603 * 13 12 10 15 15 C 1.53232 * 109.45448 * 342.48778 * 14 13 12 16 16 C 1.53473 * 108.25066 * 47.17205 * 15 14 13 17 17 O 1.35491 * 118.49080 * 353.63915 * 12 10 9 18 18 C 1.46497 * 119.99503 * 218.30025 * 9 7 2 19 19 C 1.52999 * 117.50227 * 0.38223 * 18 9 7 20 20 C 1.53000 * 60.00203 * 252.51427 * 19 18 9 21 21 H 0.96995 * 119.99543 * 354.96472 * 1 2 3 22 22 H 1.07995 * 118.86492 * 0.38687 * 13 12 10 23 23 H 1.09006 * 109.47303 * 102.47560 * 14 13 12 24 24 H 1.08995 * 109.47770 * 222.48660 * 14 13 12 25 25 H 1.08996 * 109.71110 * 166.86935 * 15 14 13 26 26 H 1.09004 * 109.70562 * 287.44997 * 15 14 13 27 27 H 1.09004 * 109.69083 * 56.71266 * 16 15 14 28 28 H 1.08994 * 109.69260 * 177.25290 * 16 15 14 29 29 H 1.09001 * 115.55266 * 146.09885 * 18 9 7 30 30 H 1.09001 * 117.50050 * 359.97438 * 19 18 9 31 31 H 1.08998 * 117.50504 * 145.02350 * 19 18 9 32 32 H 1.08997 * 117.49967 * 252.50837 * 20 19 18 33 33 H 1.09002 * 117.52316 * 107.47940 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 1.2826 2.7464 0.0006 5 1 3.1013 1.6963 1.2125 6 1 3.1014 1.6963 -1.2125 7 6 2.0089 -1.2045 0.0005 8 1 3.0441 -1.2302 0.3071 9 7 1.3815 -2.3567 -0.3874 10 6 0.5065 -2.3354 -1.4123 11 8 0.3301 -1.3085 -2.0401 12 6 -0.2365 -3.5557 -1.7721 13 6 -1.1771 -3.4721 -2.7024 14 6 -1.9925 -4.6623 -3.1295 15 6 -1.2896 -5.9489 -2.6840 16 6 -0.8701 -5.7842 -1.2170 17 8 0.0768 -4.7129 -1.1408 18 6 1.6607 -3.6137 0.3113 19 6 2.6566 -3.5706 1.4720 20 6 3.0559 -4.2194 0.1451 21 1 -0.4849 0.8368 0.0737 22 1 -1.3643 -2.5169 -3.1701 23 1 -2.9798 -4.6101 -2.6705 24 1 -2.0958 -4.6616 -4.2146 25 1 -1.9730 -6.7928 -2.7784 26 1 -0.4080 -6.1190 -3.3021 27 1 -1.7442 -5.5511 -0.6089 28 1 -0.4101 -6.7059 -0.8607 29 1 0.8198 -4.3022 0.3945 30 1 3.1044 -2.6071 1.7156 31 1 2.4710 -4.2307 2.3193 32 1 3.1329 -5.3063 0.1194 33 1 3.7658 -3.6829 -0.4844 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073054817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:20 Heat of formation + Delta-G solvation = -6.712178 kcal Electronic energy + Delta-G solvation = -17601.336881 eV Core-core repulsion = 14822.728856 eV Total energy + Delta-G solvation = -2778.608025 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81679 -37.93720 -36.02680 -33.56838 -32.83410 -31.05787 -30.47787 -25.74503 -24.99131 -23.21972 -21.61586 -21.07320 -20.18987 -18.27484 -17.27982 -16.04292 -15.86206 -15.14720 -14.62991 -14.28956 -13.92889 -13.74517 -13.39665 -13.05208 -12.90626 -12.43193 -12.05873 -11.70231 -11.22444 -10.89388 -10.87020 -10.71076 -10.58990 -10.41767 -10.30650 -10.09361 -9.85491 -9.35730 -8.78480 -8.08382 -7.72696 -7.00963 -6.12614 -3.80847 2.47506 3.31452 3.38427 3.41849 3.79298 4.28824 4.58774 4.86694 4.93013 5.00595 5.10413 5.20745 5.39917 5.56527 5.65010 5.73431 5.84238 5.88744 5.93238 6.00177 6.17525 6.27891 6.34221 6.34513 6.56435 6.72419 6.93694 7.00162 7.18282 7.57984 7.98884 8.28062 9.02234 9.19111 9.64502 10.30408 10.95499 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.009728 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.191550 B = 2877.451061 C = 3640.875014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.065 3.935 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.344 4.344 8 H 0.084 0.916 9 N -0.408 5.408 10 C 0.511 3.489 11 O -0.523 6.523 12 C 0.067 3.933 13 C -0.245 4.245 14 C -0.076 4.076 15 C -0.158 4.158 16 C 0.047 3.953 17 O -0.301 6.301 18 C 0.077 3.923 19 C -0.184 4.184 20 C -0.202 4.202 21 H 0.266 0.734 22 H 0.131 0.869 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 -11.197 -0.749 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.146 4.146 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.470 4.470 8 H 0.101 0.899 9 N -0.126 5.126 10 C 0.299 3.701 11 O -0.402 6.402 12 C 0.019 3.981 13 C -0.267 4.267 14 C -0.113 4.113 15 C -0.196 4.196 16 C -0.028 4.028 17 O -0.216 6.216 18 C -0.028 4.028 19 C -0.221 4.221 20 C -0.241 4.241 21 H 0.077 0.923 22 H 0.149 0.851 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.152 0.848 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.486 -10.558 -1.007 10.710 hybrid contribution 0.074 0.652 -0.019 0.657 sum -1.412 -9.906 -1.025 10.058 Atomic orbital electron populations 1.69828 1.06675 1.27761 1.41085 1.25223 0.94859 0.99480 0.95032 0.86188 0.79246 0.81621 0.78508 1.21099 1.20316 1.19908 1.18975 0.95376 0.84184 1.48498 0.89877 1.42721 1.38565 1.05576 1.25745 1.17213 0.84658 0.85707 0.82568 1.90643 1.66048 1.30734 1.52792 1.21177 0.97476 0.85738 0.93710 1.22706 1.01532 1.00519 1.01903 1.20325 0.97989 0.92121 1.00846 1.22201 1.01510 0.98397 0.97446 1.22975 0.93341 0.90247 0.96268 1.86391 1.44619 1.20897 1.69713 1.22312 0.92649 0.90276 0.97573 1.23132 1.05031 1.02539 0.91416 1.23215 1.01323 0.98803 1.00766 0.92340 0.85150 0.91455 0.90987 0.90882 0.90843 0.92276 0.88485 0.84755 0.87865 0.89845 0.89836 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.76 11.36 55.50 0.63 -24.13 16 2 C 0.07 1.87 4.36 -17.44 -0.08 1.80 16 3 Si 0.92 22.19 29.60 -169.99 -5.03 17.15 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.34 -9.65 8.29 -15.02 -0.12 -9.77 16 8 H 0.08 2.22 6.83 -52.49 -0.36 1.87 16 9 N -0.41 -10.86 2.87 -108.98 -0.31 -11.17 16 10 C 0.51 14.01 6.81 -12.56 -0.09 13.93 16 11 O -0.52 -16.15 13.50 5.24 0.07 -16.08 16 12 C 0.07 1.49 6.48 -37.79 -0.24 1.25 16 13 C -0.24 -4.94 9.54 -36.33 -0.35 -5.29 16 14 C -0.08 -1.12 6.22 -27.88 -0.17 -1.29 16 15 C -0.16 -2.01 6.22 -26.37 -0.16 -2.17 16 16 C 0.05 0.65 7.08 37.40 0.26 0.92 16 17 O -0.30 -5.70 6.01 -18.16 -0.11 -5.81 16 18 C 0.08 1.67 5.15 -67.93 -0.35 1.32 16 19 C -0.18 -3.49 9.78 -26.73 -0.26 -3.75 16 20 C -0.20 -3.75 10.39 -26.73 -0.28 -4.03 16 21 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 22 H 0.13 2.90 7.30 -52.49 -0.38 2.52 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.14 2.77 5.25 -52.60 -0.28 2.50 16 30 H 0.10 2.12 6.51 -51.93 -0.34 1.78 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 LS Contribution 272.45 15.07 4.11 4.11 Total: -1.00 -32.98 272.45 -6.78 -39.76 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.30 Total: 3.25 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.84 Total: -7.08 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.32 Total: -35.30 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.04 Total: -21.89 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.98 -6.78 -39.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073054817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.048 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds