Wall clock time and date at job start Sun Mar 29 2020 21:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48493 * 109.47204 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47010 * 120.00095 * 3 2 1 6 6 H 1.48505 * 109.46962 * 239.99813 * 3 2 1 7 7 C 1.39077 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99514 * 199.13509 * 7 2 1 9 9 N 1.36813 * 119.99858 * 19.13898 * 7 2 1 10 10 C 1.34774 * 120.00314 * 38.29720 * 9 7 2 11 11 O 1.21645 * 119.99809 * 4.08972 * 10 9 7 12 12 C 1.47330 * 119.99880 * 184.09209 * 10 9 7 13 13 C 1.32562 * 118.48908 * 173.89933 * 12 10 9 14 14 C 1.50461 * 122.27027 * 180.35603 * 13 12 10 15 15 C 1.53232 * 109.45448 * 342.48778 * 14 13 12 16 16 C 1.53473 * 108.25066 * 47.17205 * 15 14 13 17 17 O 1.35491 * 118.49080 * 353.63915 * 12 10 9 18 18 C 1.46497 * 119.99503 * 218.30025 * 9 7 2 19 19 C 1.52999 * 117.50227 * 0.38223 * 18 9 7 20 20 C 1.53000 * 60.00203 * 252.51427 * 19 18 9 21 21 H 0.96995 * 119.99543 * 354.96472 * 1 2 3 22 22 H 1.07995 * 118.86492 * 0.38687 * 13 12 10 23 23 H 1.09006 * 109.47303 * 102.47560 * 14 13 12 24 24 H 1.08995 * 109.47770 * 222.48660 * 14 13 12 25 25 H 1.08996 * 109.71110 * 166.86935 * 15 14 13 26 26 H 1.09004 * 109.70562 * 287.44997 * 15 14 13 27 27 H 1.09004 * 109.69083 * 56.71266 * 16 15 14 28 28 H 1.08994 * 109.69260 * 177.25290 * 16 15 14 29 29 H 1.09001 * 115.55266 * 146.09885 * 18 9 7 30 30 H 1.09001 * 117.50050 * 359.97438 * 19 18 9 31 31 H 1.08998 * 117.50504 * 145.02350 * 19 18 9 32 32 H 1.08997 * 117.49967 * 252.50837 * 20 19 18 33 33 H 1.09002 * 117.52316 * 107.47940 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 1.2826 2.7464 0.0006 5 1 3.1013 1.6963 1.2125 6 1 3.1014 1.6963 -1.2125 7 6 2.0089 -1.2045 0.0005 8 1 3.0441 -1.2302 0.3071 9 7 1.3815 -2.3567 -0.3874 10 6 0.5065 -2.3354 -1.4123 11 8 0.3301 -1.3085 -2.0401 12 6 -0.2365 -3.5557 -1.7721 13 6 -1.1771 -3.4721 -2.7024 14 6 -1.9925 -4.6623 -3.1295 15 6 -1.2896 -5.9489 -2.6840 16 6 -0.8701 -5.7842 -1.2170 17 8 0.0768 -4.7129 -1.1408 18 6 1.6607 -3.6137 0.3113 19 6 2.6566 -3.5706 1.4720 20 6 3.0559 -4.2194 0.1451 21 1 -0.4849 0.8368 0.0737 22 1 -1.3643 -2.5169 -3.1701 23 1 -2.9798 -4.6101 -2.6705 24 1 -2.0958 -4.6616 -4.2146 25 1 -1.9730 -6.7928 -2.7784 26 1 -0.4080 -6.1190 -3.3021 27 1 -1.7442 -5.5511 -0.6089 28 1 -0.4101 -6.7059 -0.8607 29 1 0.8198 -4.3022 0.3945 30 1 3.1044 -2.6071 1.7156 31 1 2.4710 -4.2307 2.3193 32 1 3.1329 -5.3063 0.1194 33 1 3.7658 -3.6829 -0.4844 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073054817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:20 Heat of formation + Delta-G solvation = -28.349300 kcal Electronic energy + Delta-G solvation = -17602.275137 eV Core-core repulsion = 14822.728856 eV Total energy + Delta-G solvation = -2779.546281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.36162 -39.67367 -37.84630 -34.95637 -34.72383 -32.94080 -32.08288 -27.59589 -26.44012 -24.68047 -23.15941 -22.74515 -21.95904 -19.62337 -19.17574 -17.86220 -17.32427 -16.86799 -16.38333 -15.87243 -15.65443 -15.11551 -14.94776 -14.75272 -14.46669 -13.96346 -13.52299 -13.45645 -12.96215 -12.81351 -12.76067 -12.22910 -12.16788 -11.90089 -11.63586 -11.58239 -11.48684 -10.98697 -10.78972 -10.07671 -9.33605 -8.99832 -8.26042 -5.98633 0.78163 1.35073 1.44961 1.48301 2.22158 2.42561 2.79065 3.08141 3.13656 3.46709 3.87834 3.90251 4.06647 4.23977 4.36405 4.40414 4.49708 4.56856 4.64328 4.71990 4.86458 4.89823 4.98274 5.06636 5.25493 5.31438 5.39350 5.41844 5.47908 5.59102 6.08947 6.55220 6.93388 7.18341 7.60537 8.27054 8.82424 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.009728 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.191550 B = 2877.451061 C = 3640.875014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.013 3.987 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.252 1.252 6 H -0.281 1.281 7 C -0.360 4.360 8 H 0.088 0.912 9 N -0.423 5.423 10 C 0.489 3.511 11 O -0.580 6.580 12 C 0.050 3.950 13 C -0.230 4.230 14 C -0.075 4.075 15 C -0.150 4.150 16 C 0.035 3.965 17 O -0.309 6.309 18 C 0.043 3.957 19 C -0.173 4.173 20 C -0.178 4.178 21 H 0.262 0.738 22 H 0.097 0.903 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.135 0.865 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 -13.988 -0.328 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.210 1.210 5 H -0.176 1.176 6 H -0.207 1.207 7 C -0.487 4.487 8 H 0.106 0.894 9 N -0.140 5.140 10 C 0.279 3.721 11 O -0.463 6.463 12 C 0.002 3.998 13 C -0.253 4.253 14 C -0.112 4.112 15 C -0.187 4.187 16 C -0.039 4.039 17 O -0.224 6.224 18 C -0.061 4.061 19 C -0.211 4.211 20 C -0.216 4.216 21 H 0.071 0.929 22 H 0.115 0.885 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.133 0.867 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.153 0.847 29 H 0.164 0.836 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.332 -13.398 -0.546 13.475 hybrid contribution 0.015 1.389 -0.182 1.401 sum -1.317 -12.009 -0.728 12.103 Atomic orbital electron populations 1.69953 1.08321 1.28057 1.43264 1.26152 0.95607 1.02991 0.94687 0.85229 0.78054 0.77386 0.78975 1.21035 1.17611 1.20651 1.19304 0.95835 0.85450 1.48153 0.89429 1.42969 1.38241 1.06854 1.25895 1.18096 0.84836 0.87016 0.82167 1.90572 1.67857 1.33329 1.54561 1.20437 0.98107 0.85834 0.95455 1.22998 1.00809 1.01495 0.99973 1.20474 0.97810 0.90690 1.02201 1.22208 1.02068 0.98302 0.96143 1.23445 0.93214 0.89629 0.97603 1.86287 1.46173 1.20548 1.69375 1.22602 0.94667 0.89061 0.99776 1.23203 1.03063 1.02411 0.92400 1.23224 0.98083 1.00668 0.99648 0.92862 0.88454 0.89677 0.89020 0.86685 0.91138 0.91860 0.84692 0.83604 0.89957 0.86230 0.85976 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -54.41 11.36 21.69 0.25 -54.17 16 2 C 0.01 0.74 4.36 84.97 0.37 1.11 16 3 Si 0.98 46.90 29.60 68.60 2.03 48.94 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.25 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 7 C -0.36 -20.86 8.29 84.12 0.70 -20.16 16 8 H 0.09 4.81 6.83 -2.92 -0.02 4.79 16 9 N -0.42 -23.10 2.87 -616.94 -1.77 -24.87 16 10 C 0.49 27.99 6.81 86.64 0.59 28.58 16 11 O -0.58 -37.97 13.50 -4.17 -0.06 -38.03 16 12 C 0.05 2.24 6.48 23.51 0.15 2.40 16 13 C -0.23 -9.37 9.54 24.46 0.23 -9.13 16 14 C -0.07 -2.00 6.22 29.85 0.19 -1.82 16 15 C -0.15 -3.16 6.22 30.83 0.19 -2.97 16 16 C 0.04 0.84 7.08 72.14 0.51 1.35 16 17 O -0.31 -11.18 6.01 -87.91 -0.53 -11.71 16 18 C 0.04 1.83 5.15 44.99 0.23 2.06 16 19 C -0.17 -6.28 9.78 30.59 0.30 -5.98 16 20 C -0.18 -6.22 10.39 30.60 0.32 -5.91 16 21 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 22 H 0.10 4.56 7.30 -2.91 -0.02 4.54 16 23 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.15 5.83 5.25 -12.99 -0.07 5.76 16 30 H 0.08 3.34 6.51 -2.39 -0.02 3.33 16 31 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 32 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -77.12 272.45 4.75 -72.37 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 1.05 Total: 17.95 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 3.78 Total: -10.47 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -1.52 Total: -79.04 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.58 Total: -49.74 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.94 kcal Total: -77.12 4.75 -72.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073054817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.019 kcal (2) G-P(sol) polarization free energy of solvation -77.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds