Wall clock time and date at job start Sun Mar 29 2020 21:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21290 * 120.00497 * 2 1 4 4 N 1.34783 * 119.99789 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00120 * 185.14796 * 4 2 1 6 6 C 1.50702 * 109.46780 * 270.00272 * 5 4 2 7 7 H 1.07996 * 120.00304 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99639 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99946 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99706 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46766 * 90.00454 * 10 8 6 12 12 H 1.48500 * 109.46724 * 210.00204 * 10 8 6 13 13 H 1.48495 * 109.47202 * 330.00372 * 10 8 6 14 14 C 1.40027 * 119.99930 * 5.14994 * 4 2 1 15 15 C 1.38853 * 120.04734 * 266.27182 * 14 4 2 16 16 C 1.38110 * 119.95779 * 179.72450 * 15 14 4 17 17 C 1.38481 * 120.04208 * 0.54437 * 16 15 14 18 18 F 1.35089 * 119.95222 * 179.70365 * 17 16 15 19 19 C 1.38473 * 120.08953 * 359.73192 * 17 16 15 20 20 C 1.38111 * 120.04536 * 359.97438 * 19 17 16 21 21 H 1.09002 * 109.47367 * 182.55454 * 1 2 3 22 22 H 1.09007 * 109.46795 * 302.54862 * 1 2 3 23 23 H 1.08997 * 109.46953 * 62.54789 * 1 2 3 24 24 H 1.08996 * 109.46928 * 29.99743 * 5 4 2 25 25 H 1.08993 * 109.47286 * 150.00451 * 5 4 2 26 26 H 0.96998 * 119.99944 * 179.97438 * 9 8 6 27 27 H 1.08003 * 120.01403 * 359.97438 * 15 14 4 28 28 H 1.07997 * 119.97797 * 180.25390 * 16 15 14 29 29 H 1.08000 * 119.97485 * 179.97438 * 19 17 16 30 30 H 1.08001 * 120.02104 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6414 -1.1699 0.1144 6 6 4.2526 -1.1076 -1.2618 7 1 3.6167 -1.0703 -2.1339 8 6 5.6237 -1.0982 -1.4073 9 7 6.3980 -1.1442 -0.3453 10 14 6.3813 -1.0218 -3.1131 11 1 6.5790 0.3972 -3.5036 12 1 7.6918 -1.7201 -3.1044 13 1 5.4752 -1.6816 -4.0872 14 6 1.4849 -2.3775 -0.1078 15 6 1.1136 -3.0709 1.0365 16 6 0.4223 -4.2615 0.9277 17 6 0.1091 -4.7696 -0.3219 18 9 -0.5619 -5.9374 -0.4264 19 6 0.4835 -4.0826 -1.4645 20 6 1.1696 -2.8886 -1.3598 21 1 -0.3634 -1.0266 0.0458 22 1 -0.3633 0.5529 0.8663 23 1 -0.3633 0.4738 -0.9119 24 1 3.9622 -0.3042 0.6938 25 1 3.9652 -2.0824 0.6147 26 1 7.3626 -1.1380 -0.4478 27 1 1.3619 -2.6772 2.0111 28 1 0.1298 -4.7990 1.8176 29 1 0.2387 -4.4808 -2.4381 30 1 1.4618 -2.3533 -2.2511 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074393531.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:41 Heat of formation + Delta-G solvation = -72.753205 kcal Electronic energy + Delta-G solvation = -16435.816081 eV Core-core repulsion = 13530.883997 eV Total energy + Delta-G solvation = -2904.932084 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.85299 -41.32376 -39.40076 -36.42438 -34.76842 -32.14004 -31.38554 -30.29009 -28.43842 -24.85256 -23.98621 -23.75662 -20.59926 -18.81687 -18.57738 -18.10023 -17.46959 -17.31993 -16.52299 -16.22500 -15.88142 -15.56402 -14.85113 -14.50252 -14.50163 -14.20932 -13.81013 -13.63243 -13.36977 -13.09726 -12.96262 -12.81563 -12.59029 -12.23820 -12.13801 -11.70783 -10.93894 -10.66737 -10.09037 -9.77854 -9.47276 -8.25147 -6.38627 0.05009 0.26270 1.35636 1.38546 1.47815 1.68671 2.20928 2.40232 2.54324 3.05759 3.27896 3.74267 3.83203 3.95238 4.27902 4.40240 4.41818 4.63324 4.70394 4.94419 4.96405 5.01585 5.12384 5.14056 5.18053 5.47260 5.54948 5.72492 5.88929 6.01689 6.66451 6.72366 7.24176 7.38732 8.82949 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.008166 C = 0.006804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.412499 B = 3428.190262 C = 4114.058058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.499 3.501 3 O -0.595 6.595 4 N -0.568 5.568 5 C 0.264 3.736 6 C -0.540 4.540 7 H 0.056 0.944 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.966 3.034 11 H -0.279 1.279 12 H -0.275 1.275 13 H -0.261 1.261 14 C 0.119 3.881 15 C -0.093 4.093 16 C -0.132 4.132 17 C 0.091 3.909 18 F -0.140 7.140 19 C -0.136 4.136 20 C -0.089 4.089 21 H 0.093 0.907 22 H 0.109 0.891 23 H 0.104 0.896 24 H 0.004 0.996 25 H 0.022 0.978 26 H 0.267 0.733 27 H 0.142 0.858 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.022 -7.773 0.285 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.290 3.710 3 O -0.475 6.475 4 N -0.296 5.296 5 C 0.144 3.856 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.205 1.205 12 H -0.201 1.201 13 H -0.185 1.185 14 C 0.029 3.971 15 C -0.113 4.113 16 C -0.151 4.151 17 C 0.071 3.929 18 F -0.119 7.119 19 C -0.156 4.156 20 C -0.109 4.109 21 H 0.111 0.889 22 H 0.128 0.872 23 H 0.123 0.877 24 H 0.022 0.978 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.184 0.816 29 H 0.177 0.823 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.534 -7.266 0.350 16.253 hybrid contribution 0.994 0.111 -0.684 1.212 sum -13.541 -7.156 -0.334 15.319 Atomic orbital electron populations 1.21901 0.87824 1.05687 1.06231 1.21757 0.92248 0.82276 0.74691 1.90665 1.72334 1.32598 1.51949 1.45871 1.07833 1.04502 1.71425 1.18835 0.74584 0.95805 0.96401 1.21652 0.92067 1.51076 0.93060 0.92624 1.25847 0.97538 0.94456 1.01291 1.70040 1.04895 1.50952 1.30873 0.85438 0.78032 0.78221 0.79308 1.20541 1.20056 1.18478 1.17897 0.96830 0.88260 0.94092 1.21358 0.96931 0.94528 0.98437 1.21198 1.00278 0.96343 0.97313 1.17787 0.96900 0.83369 0.94802 1.91490 1.77938 1.45422 1.97055 1.21171 1.00245 0.94925 0.99218 1.21332 0.96667 0.95692 0.97196 0.88860 0.87218 0.87714 0.97779 0.96034 0.92373 0.84023 0.81612 0.82310 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 10.08 71.23 0.72 -3.48 16 2 C 0.50 20.75 7.74 87.66 0.68 21.43 16 3 O -0.59 -31.20 16.73 -3.06 -0.05 -31.25 16 4 N -0.57 -24.23 2.49 -635.24 -1.58 -25.81 16 5 C 0.26 14.25 5.12 85.63 0.44 14.69 16 6 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 7 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.45 5.46 84.66 0.46 0.91 16 9 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 10 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 14 C 0.12 3.99 3.23 38.13 0.12 4.12 16 15 C -0.09 -2.50 9.78 22.39 0.22 -2.28 16 16 C -0.13 -2.88 10.02 22.30 0.22 -2.65 16 17 C 0.09 2.09 7.30 22.38 0.16 2.25 16 18 F -0.14 -3.18 17.26 44.97 0.78 -2.40 16 19 C -0.14 -3.26 10.02 22.30 0.22 -3.04 16 20 C -0.09 -2.69 9.95 22.39 0.22 -2.47 16 21 H 0.09 2.12 6.23 -2.39 -0.01 2.10 16 22 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 23 H 0.10 2.48 8.14 -2.39 -0.02 2.47 16 24 H 0.00 0.26 7.50 -2.39 -0.02 0.24 16 25 H 0.02 1.20 8.05 -2.39 -0.02 1.18 16 26 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -71.61 275.12 6.31 -65.30 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.14 Total: 4.46 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 3.71 Total: -1.36 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -1.29 Total: -81.68 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.05 Total: -31.25 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -71.61 6.31 -65.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074393531.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.452 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds