Wall clock time and date at job start Sun Mar 29 2020 21:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99674 * 2 1 4 4 H 1.48506 * 109.47267 * 270.00321 * 3 2 1 5 5 H 1.48503 * 109.47223 * 30.00182 * 3 2 1 6 6 H 1.48501 * 109.47299 * 150.00389 * 3 2 1 7 7 C 1.37873 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99861 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00196 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47354 * 179.97438 * 9 7 2 11 11 C 1.46847 * 110.99982 * 169.99549 * 10 9 7 12 12 C 1.53034 * 109.51345 * 185.84805 * 11 10 9 13 13 C 1.53123 * 109.27992 * 300.80438 * 12 11 10 14 14 C 1.52996 * 109.57495 * 177.60435 * 13 12 11 15 15 F 1.39899 * 109.47054 * 300.29209 * 14 13 12 16 16 F 1.39891 * 109.47631 * 60.29857 * 14 13 12 17 17 F 1.39904 * 109.47137 * 180.30150 * 14 13 12 18 18 C 1.53127 * 109.15019 * 57.67185 * 13 12 11 19 19 C 1.46843 * 110.99970 * 294.20914 * 10 9 7 20 20 H 0.96995 * 120.00224 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46915 * 59.99307 * 9 7 2 22 22 H 1.09003 * 109.46819 * 299.99778 * 9 7 2 23 23 H 1.09002 * 109.46481 * 305.85957 * 11 10 9 24 24 H 1.08994 * 109.46283 * 65.83811 * 11 10 9 25 25 H 1.08997 * 109.50952 * 60.75924 * 12 11 10 26 26 H 1.08998 * 109.50459 * 180.87821 * 12 11 10 27 27 H 1.09003 * 109.53012 * 297.76758 * 13 12 11 28 28 H 1.08997 * 109.49981 * 182.39822 * 18 13 12 29 29 H 1.08998 * 109.53089 * 62.30397 * 18 13 12 30 30 H 1.08993 * 109.46313 * 294.17341 * 19 10 9 31 31 H 1.09000 * 109.46480 * 54.15451 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 5.4497 -2.6249 -0.2377 12 6 5.8990 -4.0812 -0.3761 13 6 5.5490 -4.8423 0.9056 14 6 5.9413 -6.3131 0.7517 15 9 5.2498 -6.8695 -0.3297 16 9 7.3181 -6.4072 0.5230 17 9 5.6143 -7.0078 1.9212 18 6 4.0420 -4.7381 1.1561 19 6 3.6463 -3.2627 1.2500 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6806 0.8905 22 1 3.8752 -0.6795 -0.8895 23 1 5.6848 -2.0836 -1.1541 24 1 5.9702 -2.1624 0.6009 25 1 5.3892 -4.5405 -1.2230 26 1 6.9765 -4.1159 -0.5370 27 1 6.0890 -4.4074 1.7467 28 1 3.7926 -5.2420 2.0899 29 1 3.5025 -5.2080 0.3337 30 1 4.1751 -2.7971 2.0815 31 1 2.5715 -3.1849 1.4139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083879664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:50 Heat of formation + Delta-G solvation = -163.932143 kcal Electronic energy + Delta-G solvation = -17537.035256 eV Core-core repulsion = 14209.752921 eV Total energy + Delta-G solvation = -3327.282335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.07115 -47.57131 -47.51547 -38.59527 -34.17390 -32.22694 -30.63133 -28.37815 -25.80594 -23.03586 -22.67529 -20.94587 -19.72101 -18.24007 -18.19389 -17.47924 -16.77537 -15.29347 -14.61540 -14.52351 -14.43019 -14.16042 -13.98266 -13.71522 -13.69649 -13.61544 -13.37329 -13.08743 -12.60809 -12.28552 -12.04988 -11.55390 -11.02371 -11.00885 -10.79254 -10.56634 -10.33852 -10.10991 -9.88484 -9.30902 -8.60796 -7.46648 -6.09076 -4.07069 2.81327 3.25382 3.33170 3.34127 3.83721 4.05296 4.10100 4.38122 4.61401 4.86271 4.91183 5.18823 5.23431 5.42345 5.60282 5.70735 5.76579 5.90541 5.92090 6.12631 6.22942 6.45901 6.54097 6.79746 6.92308 7.53529 7.82097 7.97260 8.60363 8.98941 9.52245 11.03876 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.052340 B = 0.005840 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.836102 B = 4793.183726 C = 5038.740924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.162 3.838 10 N -0.529 5.529 11 C 0.056 3.944 12 C -0.113 4.113 13 C -0.132 4.132 14 C 0.453 3.547 15 F -0.181 7.181 16 F -0.189 7.189 17 F -0.187 7.187 18 C -0.115 4.115 19 C 0.068 3.932 20 H 0.264 0.736 21 H -0.011 1.011 22 H 0.026 0.974 23 H 0.077 0.923 24 H 0.026 0.974 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.024 0.976 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.970 -9.593 2.288 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.072 4.072 12 C -0.150 4.150 13 C -0.151 4.151 14 C 0.399 3.601 15 F -0.162 7.162 16 F -0.170 7.170 17 F -0.168 7.168 18 C -0.153 4.153 19 C -0.060 4.060 20 H 0.074 0.926 21 H 0.007 0.993 22 H 0.044 0.956 23 H 0.095 0.905 24 H 0.044 0.956 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.585 -9.745 1.899 16.030 hybrid contribution 0.905 1.097 0.643 1.560 sum 13.490 -8.648 2.542 16.224 Atomic orbital electron populations 1.69889 1.06124 1.26900 1.50869 1.24901 0.94737 0.98862 0.94795 0.86869 0.80254 0.84041 0.78615 1.20114 1.21182 1.19326 1.21030 0.88661 0.94778 1.50554 0.90040 1.20165 0.97174 0.83828 0.95191 1.61873 1.10162 1.19091 1.34233 1.21995 0.90194 0.94354 1.00697 1.21668 1.01033 0.96589 0.95749 1.22597 1.01373 0.88220 1.02937 1.20759 0.74250 0.91572 0.73497 1.93170 1.79325 1.87608 1.56118 1.93149 1.32305 1.97042 1.94528 1.93159 1.92412 1.82176 1.49100 1.21749 0.91194 0.99409 1.02984 1.21924 1.02909 0.90866 0.90334 0.92609 0.99313 0.95634 0.90504 0.95625 0.89770 0.90986 0.87492 0.90858 0.89809 0.95810 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.51 -14.16 8.98 -34.44 -0.31 -14.47 16 8 H 0.08 2.45 7.36 -52.48 -0.39 2.06 16 9 C 0.16 3.80 3.79 -4.98 -0.02 3.78 16 10 N -0.53 -10.48 4.65 -236.12 -1.10 -11.57 16 11 C 0.06 0.89 5.46 -3.84 -0.02 0.87 16 12 C -0.11 -1.48 5.13 -26.65 -0.14 -1.61 16 13 C -0.13 -1.67 2.23 -90.49 -0.20 -1.87 16 14 C 0.45 5.71 2.69 37.16 0.10 5.81 16 15 F -0.18 -2.46 16.20 2.25 0.04 -2.43 16 16 F -0.19 -2.35 16.86 2.25 0.04 -2.32 16 17 F -0.19 -2.41 16.85 2.25 0.04 -2.37 16 18 C -0.12 -1.66 5.13 -26.64 -0.14 -1.80 16 19 C 0.07 1.21 5.29 -3.83 -0.02 1.19 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 22 H 0.03 0.60 7.41 -51.93 -0.38 0.21 16 23 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 1.17 7.74 -51.93 -0.40 0.77 16 26 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 27 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 29 H 0.08 1.28 7.75 -51.93 -0.40 0.88 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 1.99 6.70 -51.93 -0.35 1.64 16 LS Contribution 261.59 15.07 3.94 3.94 Total: -1.00 -29.11 261.59 -5.75 -34.85 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -3.97 Total: -3.93 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.84 Total: -6.24 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.32 Total: -37.89 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.11 Total: -7.11 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.11 -5.75 -34.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083879664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.080 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds