Wall clock time and date at job start Sun Mar 29 2020 21:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99674 * 2 1 4 4 H 1.48506 * 109.47267 * 270.00321 * 3 2 1 5 5 H 1.48503 * 109.47223 * 30.00182 * 3 2 1 6 6 H 1.48501 * 109.47299 * 150.00389 * 3 2 1 7 7 C 1.37873 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99861 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00196 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47354 * 179.97438 * 9 7 2 11 11 C 1.46847 * 110.99982 * 169.99549 * 10 9 7 12 12 C 1.53034 * 109.51345 * 185.84805 * 11 10 9 13 13 C 1.53123 * 109.27992 * 300.80438 * 12 11 10 14 14 C 1.52996 * 109.57495 * 177.60435 * 13 12 11 15 15 F 1.39899 * 109.47054 * 300.29209 * 14 13 12 16 16 F 1.39891 * 109.47631 * 60.29857 * 14 13 12 17 17 F 1.39904 * 109.47137 * 180.30150 * 14 13 12 18 18 C 1.53127 * 109.15019 * 57.67185 * 13 12 11 19 19 C 1.46843 * 110.99970 * 294.20914 * 10 9 7 20 20 H 0.96995 * 120.00224 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46915 * 59.99307 * 9 7 2 22 22 H 1.09003 * 109.46819 * 299.99778 * 9 7 2 23 23 H 1.09002 * 109.46481 * 305.85957 * 11 10 9 24 24 H 1.08994 * 109.46283 * 65.83811 * 11 10 9 25 25 H 1.08997 * 109.50952 * 60.75924 * 12 11 10 26 26 H 1.08998 * 109.50459 * 180.87821 * 12 11 10 27 27 H 1.09003 * 109.53012 * 297.76758 * 13 12 11 28 28 H 1.08997 * 109.49981 * 182.39822 * 18 13 12 29 29 H 1.08998 * 109.53089 * 62.30397 * 18 13 12 30 30 H 1.08993 * 109.46313 * 294.17341 * 19 10 9 31 31 H 1.09000 * 109.46480 * 54.15451 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 5.4497 -2.6249 -0.2377 12 6 5.8990 -4.0812 -0.3761 13 6 5.5490 -4.8423 0.9056 14 6 5.9413 -6.3131 0.7517 15 9 5.2498 -6.8695 -0.3297 16 9 7.3181 -6.4072 0.5230 17 9 5.6143 -7.0078 1.9212 18 6 4.0420 -4.7381 1.1561 19 6 3.6463 -3.2627 1.2500 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6806 0.8905 22 1 3.8752 -0.6795 -0.8895 23 1 5.6848 -2.0836 -1.1541 24 1 5.9702 -2.1624 0.6009 25 1 5.3892 -4.5405 -1.2230 26 1 6.9765 -4.1159 -0.5370 27 1 6.0890 -4.4074 1.7467 28 1 3.7926 -5.2420 2.0899 29 1 3.5025 -5.2080 0.3337 30 1 4.1751 -2.7971 2.0815 31 1 2.5715 -3.1849 1.4139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083879664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:49 Heat of formation + Delta-G solvation = -182.798783 kcal Electronic energy + Delta-G solvation = -17537.853375 eV Core-core repulsion = 14209.752921 eV Total energy + Delta-G solvation = -3328.100454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.07778 -48.56082 -48.54095 -39.92914 -35.74715 -34.16543 -31.87514 -30.08573 -27.24859 -24.40625 -23.99874 -22.54679 -20.95165 -19.28798 -19.23716 -18.90343 -18.47182 -16.81319 -16.14134 -15.88226 -15.53202 -15.52980 -15.05900 -14.95696 -14.76335 -14.71060 -14.65925 -14.44488 -14.25927 -13.85710 -13.44816 -13.02772 -12.60492 -12.44058 -12.19310 -12.03230 -11.81470 -11.74193 -11.44040 -11.24699 -10.76526 -9.01100 -8.26962 -6.30605 1.36751 1.37704 1.48149 1.79677 2.35584 2.81070 3.01725 3.06249 3.09675 3.21006 3.77995 3.81877 4.13527 4.21083 4.37897 4.48058 4.59479 4.67039 4.74094 4.86864 4.96797 5.03008 5.09603 5.16879 5.30428 5.55151 5.99763 6.38060 6.67304 6.76414 7.33279 8.89571 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.052340 B = 0.005840 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.836102 B = 4793.183726 C = 5038.740924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.517 4.517 8 H 0.038 0.962 9 C 0.171 3.829 10 N -0.549 5.549 11 C 0.054 3.946 12 C -0.106 4.106 13 C -0.126 4.126 14 C 0.460 3.540 15 F -0.188 7.188 16 F -0.184 7.184 17 F -0.187 7.187 18 C -0.107 4.107 19 C 0.070 3.930 20 H 0.266 0.734 21 H -0.009 1.009 22 H 0.031 0.969 23 H 0.081 0.919 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.129 0.871 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.687 -9.299 2.572 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.556 4.556 8 H 0.056 0.944 9 C 0.044 3.956 10 N -0.274 5.274 11 C -0.074 4.074 12 C -0.144 4.144 13 C -0.146 4.146 14 C 0.406 3.594 15 F -0.170 7.170 16 F -0.166 7.166 17 F -0.169 7.169 18 C -0.145 4.145 19 C -0.058 4.058 20 H 0.075 0.925 21 H 0.008 0.992 22 H 0.049 0.951 23 H 0.100 0.900 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.147 0.853 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.328 -9.479 2.183 18.154 hybrid contribution 0.017 0.900 0.555 1.058 sum 15.345 -8.579 2.738 17.792 Atomic orbital electron populations 1.70054 1.08192 1.28094 1.52641 1.25863 0.95587 1.03203 0.94405 0.85703 0.79361 0.78557 0.79223 1.19066 1.20963 1.17269 1.21294 0.91233 0.93234 1.49813 0.94365 1.19919 0.94130 0.86289 0.95216 1.61763 1.13283 1.16959 1.35387 1.22106 0.87386 0.96457 1.01426 1.21630 1.02631 0.94615 0.95537 1.22548 0.99905 0.88483 1.03633 1.20619 0.74311 0.91231 0.73231 1.93164 1.79556 1.87736 1.56542 1.93161 1.31899 1.97006 1.94490 1.93164 1.92441 1.82191 1.49097 1.21616 0.92714 0.96719 1.03462 1.21836 1.00809 0.93137 0.90053 0.92478 0.99170 0.95113 0.90015 0.94233 0.90768 0.88050 0.85306 0.89117 0.91167 0.94792 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 43.16 27.47 68.60 1.88 45.05 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 7 C -0.52 -29.40 8.98 25.60 0.23 -29.17 16 8 H 0.04 2.43 7.36 -2.91 -0.02 2.41 16 9 C 0.17 7.91 3.79 85.56 0.32 8.23 16 10 N -0.55 -21.34 4.65 -900.96 -4.19 -25.53 16 11 C 0.05 1.56 5.46 86.32 0.47 2.03 16 12 C -0.11 -2.47 5.13 30.65 0.16 -2.31 16 13 C -0.13 -2.83 2.23 -10.71 -0.02 -2.86 16 14 C 0.46 10.34 2.69 71.98 0.19 10.53 16 15 F -0.19 -4.79 16.20 44.97 0.73 -4.06 16 16 F -0.18 -3.99 16.86 44.97 0.76 -3.23 16 17 F -0.19 -4.34 16.85 44.97 0.76 -3.58 16 18 C -0.11 -2.95 5.13 30.65 0.16 -2.79 16 19 C 0.07 2.47 5.29 86.33 0.46 2.93 16 20 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 21 H -0.01 -0.43 7.18 -2.39 -0.02 -0.44 16 22 H 0.03 1.39 7.41 -2.39 -0.02 1.37 16 23 H 0.08 2.28 8.02 -2.39 -0.02 2.26 16 24 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.90 7.74 -2.39 -0.02 1.88 16 26 H 0.10 1.82 7.89 -2.39 -0.02 1.80 16 27 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.09 2.17 7.88 -2.39 -0.02 2.15 16 29 H 0.07 2.12 7.75 -2.39 -0.02 2.10 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 2.56 6.70 -2.39 -0.02 2.54 16 Total: -1.00 -63.82 261.59 3.74 -60.08 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: 1.07 Total: 2.48 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 2.43 Total: -12.56 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.89 Total: -84.17 kcal Atomic # 9 Polarization: -13.12 SS G_CDS: 2.24 Total: -10.87 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Total: -63.82 3.74 -60.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083879664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.723 kcal (2) G-P(sol) polarization free energy of solvation -63.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds