Wall clock time and date at job start Sun Mar 29 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.43681 * 2 1 4 4 C 1.33654 * 110.90967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80096 * 180.02562 * 4 3 2 6 6 C 1.36414 * 108.39353 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19000 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00197 * 89.97253 * 7 6 4 9 9 N 1.34778 * 119.99651 * 269.97514 * 7 6 4 10 10 C 1.46501 * 119.99759 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.47347 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99387 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00104 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99681 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47155 * 90.00072 * 15 13 11 17 17 H 1.48507 * 109.47084 * 209.99734 * 15 13 11 18 18 H 1.48489 * 109.47406 * 330.00109 * 15 13 11 19 19 C 1.34172 * 125.44135 * 179.97438 * 2 1 3 20 20 C 1.50706 * 127.02111 * 359.97438 * 19 2 1 21 21 H 1.09003 * 109.47362 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46890 * 120.02122 * 1 2 3 23 23 H 1.09001 * 109.47222 * 240.02152 * 1 2 3 24 24 H 1.08998 * 109.47079 * 359.97438 * 5 4 3 25 25 H 1.09001 * 109.46613 * 119.97767 * 5 4 3 26 26 H 1.08999 * 109.47072 * 239.97943 * 5 4 3 27 27 H 0.96997 * 120.00600 * 359.97438 * 9 7 6 28 28 H 1.09009 * 109.47024 * 299.99297 * 10 9 7 29 29 H 1.09000 * 109.47482 * 59.99504 * 10 9 7 30 30 H 0.96992 * 120.00305 * 180.02562 * 14 13 11 31 31 H 1.08997 * 109.47359 * 270.03118 * 20 19 2 32 32 H 1.09003 * 109.46910 * 30.02795 * 20 19 2 33 33 H 1.08995 * 109.46868 * 150.02195 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0006 5 6 4.7390 1.7204 0.0013 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4108 -1.7462 1.0534 9 7 5.4652 -1.7829 -1.1670 10 6 6.6891 -2.5882 -1.1671 11 6 7.1083 -2.8649 -2.5880 12 1 6.5214 -2.4797 -3.4088 13 6 8.2409 -3.6097 -2.8400 14 7 8.9557 -4.0782 -1.8404 15 14 8.7599 -3.9532 -4.6012 16 1 9.6665 -2.8743 -5.0695 17 1 9.4686 -5.2568 -4.6631 18 1 7.5576 -4.0017 -5.4712 19 6 2.2850 -1.0931 0.0005 20 6 1.8309 -2.5301 0.0017 21 1 -0.3634 1.0277 -0.0005 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3634 -0.5135 0.8902 24 1 4.3626 2.7433 0.0008 25 1 5.3460 1.5568 0.8918 26 1 5.3473 1.5567 -0.8882 27 1 5.0597 -1.5169 -2.0070 28 1 7.4819 -2.0443 -0.6534 29 1 6.5035 -3.5313 -0.6532 30 1 9.7527 -4.6018 -2.0177 31 1 1.7212 -2.8757 1.0296 32 1 0.8728 -2.6088 -0.5122 33 1 2.5700 -3.1451 -0.5116 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105949917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:37 Heat of formation + Delta-G solvation = -45.370414 kcal Electronic energy + Delta-G solvation = -16470.130042 eV Core-core repulsion = 13689.845670 eV Total energy + Delta-G solvation = -2780.284372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.39456 -38.48145 -34.15395 -34.10030 -32.90875 -32.17686 -29.71851 -28.20312 -27.13883 -24.54129 -23.33930 -21.63691 -19.67781 -18.93756 -17.18586 -16.35586 -16.03300 -15.21456 -15.09673 -14.38413 -14.26934 -13.54830 -13.48336 -13.45759 -12.86253 -12.80349 -12.65496 -12.59254 -12.38269 -12.11298 -11.94021 -11.77029 -11.07029 -11.00490 -10.86370 -10.34351 -9.43799 -9.28712 -9.06731 -8.73547 -8.12666 -7.88985 -6.16561 -4.23470 1.77818 2.41611 2.89240 3.24331 3.26905 3.30634 3.33285 4.15350 4.38681 4.62346 4.96244 5.06514 5.14709 5.19605 5.32867 5.40749 5.50772 5.56384 5.58772 5.77653 5.82561 5.91591 5.98802 6.09821 6.34599 6.61692 7.26016 7.31155 7.42619 7.50920 7.67317 7.96586 8.62936 8.77957 9.09535 9.43191 10.93699 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.005499 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.432153 B = 5090.273496 C = 5241.682402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.026 4.026 3 O -0.176 6.176 4 C 0.030 3.970 5 C -0.077 4.077 6 C -0.213 4.213 7 C 0.574 3.426 8 O -0.549 6.549 9 N -0.701 5.701 10 C 0.249 3.751 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.145 4.145 20 C -0.084 4.084 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.392 0.608 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.266 0.734 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 8.943 1.022 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 O -0.074 6.074 4 C -0.021 4.021 5 C -0.133 4.133 6 C -0.217 4.217 7 C 0.357 3.643 8 O -0.428 6.428 9 N -0.349 5.349 10 C 0.128 3.872 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.147 4.147 20 C -0.141 4.141 21 H 0.092 0.908 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.225 0.775 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.494 8.841 1.804 17.073 hybrid contribution 0.291 -0.288 -1.294 1.358 sum -14.202 8.554 0.509 16.587 Atomic orbital electron populations 1.20243 0.85049 1.03643 1.03382 1.21878 0.93569 0.83433 1.08579 1.83617 1.16095 1.35125 1.72541 1.22447 0.82969 0.93561 1.03097 1.20411 0.91693 0.96559 1.04635 1.21330 0.94498 0.93273 1.12614 1.17322 0.82420 0.79792 0.84741 1.90756 1.63944 1.56483 1.31640 1.46480 1.28720 1.52960 1.06726 1.19158 0.80256 0.90265 0.97516 1.21218 1.10598 1.34816 0.91464 0.91883 1.24943 0.95999 0.95227 0.97776 1.69972 1.16439 1.34958 1.30927 0.86412 0.78755 0.77790 0.83941 1.20447 1.20989 1.19751 1.21081 0.90409 0.96358 1.06802 1.20187 1.01149 0.90401 1.02336 0.90762 0.89845 0.89913 0.90355 0.89145 0.89030 0.77545 0.95377 0.95417 0.92434 0.91200 0.91496 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 9.93 36.01 0.36 -0.22 16 2 C -0.03 -0.36 7.28 -35.74 -0.26 -0.62 16 3 O -0.18 -2.61 10.52 7.65 0.08 -2.53 16 4 C 0.03 0.48 7.37 -34.96 -0.26 0.22 16 5 C -0.08 -0.98 10.18 36.01 0.37 -0.61 16 6 C -0.21 -3.89 6.07 -103.28 -0.63 -4.52 16 7 C 0.57 12.65 7.41 -12.54 -0.09 12.55 16 8 O -0.55 -14.29 17.11 5.27 0.09 -14.20 16 9 N -0.70 -15.63 5.55 -62.57 -0.35 -15.98 16 10 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 11 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 12 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 15 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.14 -2.28 6.37 -102.50 -0.65 -2.93 16 20 C -0.08 -1.14 10.15 36.01 0.37 -0.78 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.39 7.76 8.31 -40.82 -0.34 7.43 16 28 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.70 7.90 -51.93 -0.41 0.29 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 295.78 15.07 4.46 4.46 Total: -1.00 -33.29 295.78 -5.76 -39.05 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.51 Total: 2.43 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.25 Total: -3.70 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.39 Total: -41.37 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.17 Total: -16.73 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.29 -5.76 -39.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105949917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.322 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds