Wall clock time and date at job start Sun Mar 29 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.43681 * 2 1 4 4 C 1.33654 * 110.90967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80096 * 180.02562 * 4 3 2 6 6 C 1.36414 * 108.39353 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19000 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00197 * 89.97253 * 7 6 4 9 9 N 1.34778 * 119.99651 * 269.97514 * 7 6 4 10 10 C 1.46501 * 119.99759 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.47347 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99387 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00104 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99681 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47155 * 90.00072 * 15 13 11 17 17 H 1.48507 * 109.47084 * 209.99734 * 15 13 11 18 18 H 1.48489 * 109.47406 * 330.00109 * 15 13 11 19 19 C 1.34172 * 125.44135 * 179.97438 * 2 1 3 20 20 C 1.50706 * 127.02111 * 359.97438 * 19 2 1 21 21 H 1.09003 * 109.47362 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46890 * 120.02122 * 1 2 3 23 23 H 1.09001 * 109.47222 * 240.02152 * 1 2 3 24 24 H 1.08998 * 109.47079 * 359.97438 * 5 4 3 25 25 H 1.09001 * 109.46613 * 119.97767 * 5 4 3 26 26 H 1.08999 * 109.47072 * 239.97943 * 5 4 3 27 27 H 0.96997 * 120.00600 * 359.97438 * 9 7 6 28 28 H 1.09009 * 109.47024 * 299.99297 * 10 9 7 29 29 H 1.09000 * 109.47482 * 59.99504 * 10 9 7 30 30 H 0.96992 * 120.00305 * 180.02562 * 14 13 11 31 31 H 1.08997 * 109.47359 * 270.03118 * 20 19 2 32 32 H 1.09003 * 109.46910 * 30.02795 * 20 19 2 33 33 H 1.08995 * 109.46868 * 150.02195 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0006 5 6 4.7390 1.7204 0.0013 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4108 -1.7462 1.0534 9 7 5.4652 -1.7829 -1.1670 10 6 6.6891 -2.5882 -1.1671 11 6 7.1083 -2.8649 -2.5880 12 1 6.5214 -2.4797 -3.4088 13 6 8.2409 -3.6097 -2.8400 14 7 8.9557 -4.0782 -1.8404 15 14 8.7599 -3.9532 -4.6012 16 1 9.6665 -2.8743 -5.0695 17 1 9.4686 -5.2568 -4.6631 18 1 7.5576 -4.0017 -5.4712 19 6 2.2850 -1.0931 0.0005 20 6 1.8309 -2.5301 0.0017 21 1 -0.3634 1.0277 -0.0005 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3634 -0.5135 0.8902 24 1 4.3626 2.7433 0.0008 25 1 5.3460 1.5568 0.8918 26 1 5.3473 1.5567 -0.8882 27 1 5.0597 -1.5169 -2.0070 28 1 7.4819 -2.0443 -0.6534 29 1 6.5035 -3.5313 -0.6532 30 1 9.7527 -4.6018 -2.0177 31 1 1.7212 -2.8757 1.0296 32 1 0.8728 -2.6088 -0.5122 33 1 2.5700 -3.1451 -0.5116 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105949917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:37 Heat of formation + Delta-G solvation = -68.428068 kcal Electronic energy + Delta-G solvation = -16471.129897 eV Core-core repulsion = 13689.845670 eV Total energy + Delta-G solvation = -2781.284227 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.58871 -40.34427 -36.19993 -35.24155 -34.46221 -33.88963 -30.60739 -29.76304 -28.81104 -25.87375 -24.92752 -23.39033 -21.24491 -20.35083 -18.83360 -17.77845 -17.58450 -16.99980 -16.72959 -16.07997 -16.00729 -14.90052 -14.74137 -14.41069 -14.29915 -14.02038 -13.92259 -13.88867 -13.62540 -13.47415 -13.31474 -13.00439 -12.98423 -12.73069 -12.26371 -12.20085 -11.53598 -11.12424 -10.83134 -10.44146 -9.95233 -9.25778 -8.30900 -6.48102 0.58366 1.18715 1.42711 1.45003 1.50654 1.56580 1.77691 2.31684 2.57117 3.03888 3.50736 3.79987 3.92619 4.12814 4.34451 4.40358 4.52315 4.65296 4.67766 4.79738 4.87511 4.88278 4.96230 5.04938 5.08194 5.18354 5.21236 5.40774 5.54275 5.61088 5.80115 6.09078 6.60227 6.77561 7.18160 7.34032 8.81422 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.005499 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.432153 B = 5090.273496 C = 5241.682402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.009 4.009 3 O -0.172 6.172 4 C 0.040 3.960 5 C -0.079 4.079 6 C -0.254 4.254 7 C 0.581 3.419 8 O -0.597 6.597 9 N -0.693 5.693 10 C 0.266 3.734 11 C -0.557 4.557 12 H 0.082 0.918 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.986 3.014 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.257 1.257 19 C -0.172 4.172 20 C -0.081 4.081 21 H 0.091 0.909 22 H 0.105 0.895 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.406 0.594 28 H -0.006 1.006 29 H -0.011 1.011 30 H 0.270 0.730 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 10.195 -0.844 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 O -0.069 6.069 4 C -0.012 4.012 5 C -0.135 4.135 6 C -0.258 4.258 7 C 0.367 3.633 8 O -0.480 6.480 9 N -0.341 5.341 10 C 0.143 3.857 11 C -0.595 4.595 12 H 0.100 0.900 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.809 3.191 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.181 1.181 19 C -0.174 4.174 20 C -0.138 4.138 21 H 0.110 0.890 22 H 0.123 0.877 23 H 0.119 0.881 24 H 0.130 0.870 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.241 0.759 28 H 0.011 0.989 29 H 0.007 0.993 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.708 10.121 -0.082 19.534 hybrid contribution 0.908 -0.640 -0.638 1.281 sum -15.800 9.481 -0.720 18.441 Atomic orbital electron populations 1.20534 0.81091 1.05441 1.05222 1.22753 0.95430 0.82144 1.05443 1.83670 1.15590 1.35593 1.72086 1.22811 0.84102 0.93028 1.01258 1.20544 0.90768 0.97887 1.04300 1.21125 0.93915 0.94281 1.16486 1.17827 0.82984 0.78921 0.83541 1.90714 1.65638 1.58377 1.33232 1.46225 1.27520 1.52483 1.07864 1.18650 0.81088 0.88633 0.97280 1.21557 1.11203 1.35141 0.91582 0.90039 1.26048 0.95768 0.94549 1.02935 1.70131 1.17073 1.35688 1.33893 0.85137 0.78747 0.77643 0.77573 1.19417 1.20782 1.18105 1.21345 0.89318 0.98012 1.08745 1.20213 1.02092 0.88891 1.02569 0.89036 0.87692 0.88147 0.86962 0.89886 0.88868 0.75863 0.98852 0.99261 0.92122 0.91128 0.87810 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 9.93 71.24 0.71 -0.17 16 2 C -0.01 -0.23 7.28 24.76 0.18 -0.05 16 3 O -0.17 -4.69 10.52 4.45 0.05 -4.64 16 4 C 0.04 1.22 7.37 25.26 0.19 1.41 16 5 C -0.08 -1.93 10.18 71.24 0.72 -1.21 16 6 C -0.25 -9.36 6.07 -18.99 -0.12 -9.48 16 7 C 0.58 26.78 7.41 86.65 0.64 27.42 16 8 O -0.60 -32.99 17.11 -4.06 -0.07 -33.06 16 9 N -0.69 -32.13 5.55 -470.13 -2.61 -34.74 16 10 C 0.27 15.09 5.43 85.63 0.46 15.56 16 11 C -0.56 -30.90 9.28 25.60 0.24 -30.66 16 12 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 13 C 0.01 0.38 5.46 84.65 0.46 0.85 16 14 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 15 Si 0.99 42.53 29.54 68.60 2.03 44.56 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 C -0.17 -5.25 6.37 -18.49 -0.12 -5.37 16 20 C -0.08 -2.13 10.15 71.24 0.72 -1.41 16 21 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.41 16.36 8.31 -92.71 -0.77 15.59 16 28 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 1.88 7.90 -2.39 -0.02 1.86 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -75.33 295.78 4.12 -71.20 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.35 Total: 15.84 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 4.10 Total: -3.11 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -2.32 Total: -90.79 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.02 Total: -37.70 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -75.33 4.12 -71.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105949917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.776 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds