Wall clock time and date at job start Sun Mar 29 2020 21:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48500 * 109.47044 * 240.00298 * 3 2 1 5 5 H 1.48496 * 109.47429 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47302 * 120.00218 * 3 2 1 7 7 C 1.37879 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00302 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99602 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.53618 * 299.90333 * 9 7 2 11 11 C 1.53114 * 109.50089 * 60.00288 * 9 7 2 12 12 C 1.53125 * 109.16137 * 177.59348 * 11 9 7 13 13 C 1.53032 * 109.27670 * 302.34679 * 12 11 9 14 14 N 1.46854 * 109.52427 * 59.17600 * 13 12 11 15 15 C 1.46901 * 111.00005 * 174.15820 * 14 13 12 16 16 C 1.53003 * 109.47148 * 76.96503 * 15 14 13 17 17 F 1.39907 * 109.46987 * 66.37824 * 16 15 14 18 18 F 1.39895 * 109.47372 * 186.37854 * 16 15 14 19 19 F 1.39906 * 109.47085 * 306.38635 * 16 15 14 20 20 C 1.46842 * 111.19581 * 298.25892 * 14 13 12 21 21 H 0.97005 * 120.00214 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.52581 * 57.69266 * 11 9 7 23 23 H 1.09000 * 109.52678 * 297.49616 * 11 9 7 24 24 H 1.09008 * 109.49860 * 62.28432 * 12 11 9 25 25 H 1.08994 * 109.50567 * 182.40085 * 12 11 9 26 26 H 1.09001 * 109.46276 * 179.18922 * 13 12 11 27 27 H 1.08999 * 109.46237 * 299.16208 * 13 12 11 28 28 H 1.08997 * 109.47223 * 196.96554 * 15 14 13 29 29 H 1.08999 * 109.46978 * 316.96992 * 15 14 13 30 30 H 1.09008 * 109.45751 * 181.76047 * 20 14 13 31 31 H 1.09000 * 109.46140 * 301.71879 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6256 -2.5590 0.8902 11 6 0.3701 -2.5808 -1.2502 12 6 -0.3456 -3.9343 -1.2731 13 6 0.6945 -5.0563 -1.2417 14 7 1.5112 -4.9347 -0.0274 15 6 2.4287 -6.0741 0.1063 16 6 3.6083 -5.8941 -0.8514 17 9 4.3704 -4.7914 -0.4505 18 9 4.4052 -7.0437 -0.8311 19 9 3.1281 -5.6823 -2.1482 20 6 2.2448 -3.6629 -0.0061 21 1 -0.4851 0.8401 0.0004 22 1 0.9909 -2.4820 -2.1407 23 1 -0.3679 -1.7789 -1.2287 24 1 -0.9962 -4.0166 -0.4023 25 1 -0.9414 -4.0156 -2.1821 26 1 0.1878 -6.0214 -1.2434 27 1 1.3360 -4.9815 -2.1198 28 1 2.7971 -6.1257 1.1308 29 1 1.9008 -6.9962 -0.1369 30 1 2.8643 -3.6159 0.8896 31 1 2.8791 -3.5947 -0.8900 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107467767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:09 Heat of formation + Delta-G solvation = -155.194680 kcal Electronic energy + Delta-G solvation = -18178.595624 eV Core-core repulsion = 14851.692174 eV Total energy + Delta-G solvation = -3326.903450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.97232 -47.46674 -47.38737 -38.29131 -34.03864 -32.02687 -29.94542 -28.12277 -25.00359 -23.70512 -21.86165 -21.46141 -19.12637 -18.35691 -18.16674 -16.92773 -16.28022 -15.10786 -14.64115 -14.44955 -14.36745 -14.09154 -13.85086 -13.67882 -13.53192 -13.26697 -12.68373 -12.59408 -12.36161 -11.96160 -11.70457 -11.51994 -10.91910 -10.69849 -10.65521 -10.12841 -9.83632 -9.51353 -9.12898 -8.74747 -8.32362 -7.94859 -5.97814 -4.03844 3.00331 3.33345 3.37680 3.40610 3.92214 4.08651 4.22889 4.44428 4.60374 5.18255 5.32314 5.48575 5.57237 5.75821 6.00941 6.17045 6.29446 6.43733 6.63971 6.70199 6.87724 7.11358 7.25089 7.42123 7.58158 7.75794 8.03781 8.14658 8.45853 8.99501 9.60480 11.08288 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.034182 B = 0.008131 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.957307 B = 3442.776311 C = 3959.343789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.113 4.113 12 C -0.116 4.116 13 C 0.039 3.961 14 N -0.520 5.520 15 C 0.017 3.983 16 C 0.411 3.589 17 F -0.177 7.177 18 F -0.196 7.196 19 F -0.184 7.184 20 C 0.048 3.952 21 H 0.260 0.740 22 H 0.031 0.969 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -11.829 -1.513 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.151 4.151 12 C -0.154 4.154 13 C -0.088 4.088 14 N -0.241 5.241 15 C -0.115 4.115 16 C 0.354 3.646 17 F -0.159 7.159 18 F -0.178 7.178 19 F -0.165 7.165 20 C -0.078 4.078 21 H 0.070 0.930 22 H 0.050 0.950 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.621 -11.675 -1.128 12.018 hybrid contribution 1.295 0.905 -0.895 1.816 sum 3.915 -10.769 -2.023 11.636 Atomic orbital electron populations 1.69871 1.05839 1.26483 1.50571 1.24921 0.94837 0.98956 0.95066 0.86675 0.79612 0.83192 0.78615 1.20348 1.21306 1.20271 1.21087 0.92868 0.90519 1.50878 0.92774 1.18677 0.92468 0.90205 0.94944 0.94707 1.21687 1.00130 0.94752 0.98541 1.21672 0.97028 0.96250 1.00461 1.22513 0.96113 0.99360 0.90850 1.62294 1.21307 1.01915 1.38621 1.23775 0.89650 0.99033 0.98994 1.22569 0.86309 0.73679 0.82032 1.93213 1.78402 1.53951 1.90290 1.93141 1.77094 1.50961 1.96591 1.93111 1.87436 1.94632 1.41341 1.22844 0.96924 0.87788 1.00237 0.92974 0.94990 0.88876 0.92031 0.93147 0.91983 0.93190 0.86620 0.87243 0.91368 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 11.35 55.43 0.63 -24.60 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.13 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 12 C -0.12 -2.22 6.09 -26.65 -0.16 -2.38 16 13 C 0.04 0.66 5.03 -3.83 -0.02 0.64 16 14 N -0.52 -9.12 4.86 -234.67 -1.14 -10.26 16 15 C 0.02 0.23 5.74 -3.82 -0.02 0.21 16 16 C 0.41 6.16 2.83 37.16 0.11 6.27 16 17 F -0.18 -3.05 13.94 2.25 0.03 -3.01 16 18 F -0.20 -2.72 17.32 2.25 0.04 -2.69 16 19 F -0.18 -3.00 13.84 2.25 0.03 -2.97 16 20 C 0.05 1.01 3.17 -3.84 -0.01 1.00 16 21 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 24 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 27 H 0.05 0.88 5.57 -51.93 -0.29 0.59 16 28 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.11 1.19 7.85 -51.93 -0.41 0.78 16 30 H 0.07 1.42 7.77 -51.92 -0.40 1.02 16 31 H 0.04 0.83 5.70 -51.93 -0.30 0.53 16 LS Contribution 253.93 15.07 3.83 3.83 Total: -1.00 -28.25 253.93 -6.23 -34.48 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -3.78 Total: -2.45 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.84 Total: -8.64 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.51 Total: -34.87 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.10 Total: -8.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.25 -6.23 -34.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107467767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.719 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds