Wall clock time and date at job start Sun Mar 29 2020 21:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48500 * 109.47044 * 240.00298 * 3 2 1 5 5 H 1.48496 * 109.47429 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47302 * 120.00218 * 3 2 1 7 7 C 1.37879 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00302 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99602 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.53618 * 299.90333 * 9 7 2 11 11 C 1.53114 * 109.50089 * 60.00288 * 9 7 2 12 12 C 1.53125 * 109.16137 * 177.59348 * 11 9 7 13 13 C 1.53032 * 109.27670 * 302.34679 * 12 11 9 14 14 N 1.46854 * 109.52427 * 59.17600 * 13 12 11 15 15 C 1.46901 * 111.00005 * 174.15820 * 14 13 12 16 16 C 1.53003 * 109.47148 * 76.96503 * 15 14 13 17 17 F 1.39907 * 109.46987 * 66.37824 * 16 15 14 18 18 F 1.39895 * 109.47372 * 186.37854 * 16 15 14 19 19 F 1.39906 * 109.47085 * 306.38635 * 16 15 14 20 20 C 1.46842 * 111.19581 * 298.25892 * 14 13 12 21 21 H 0.97005 * 120.00214 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.52581 * 57.69266 * 11 9 7 23 23 H 1.09000 * 109.52678 * 297.49616 * 11 9 7 24 24 H 1.09008 * 109.49860 * 62.28432 * 12 11 9 25 25 H 1.08994 * 109.50567 * 182.40085 * 12 11 9 26 26 H 1.09001 * 109.46276 * 179.18922 * 13 12 11 27 27 H 1.08999 * 109.46237 * 299.16208 * 13 12 11 28 28 H 1.08997 * 109.47223 * 196.96554 * 15 14 13 29 29 H 1.08999 * 109.46978 * 316.96992 * 15 14 13 30 30 H 1.09008 * 109.45751 * 181.76047 * 20 14 13 31 31 H 1.09000 * 109.46140 * 301.71879 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6256 -2.5590 0.8902 11 6 0.3701 -2.5808 -1.2502 12 6 -0.3456 -3.9343 -1.2731 13 6 0.6945 -5.0563 -1.2417 14 7 1.5112 -4.9347 -0.0274 15 6 2.4287 -6.0741 0.1063 16 6 3.6083 -5.8941 -0.8514 17 9 4.3704 -4.7914 -0.4505 18 9 4.4052 -7.0437 -0.8311 19 9 3.1281 -5.6823 -2.1482 20 6 2.2448 -3.6629 -0.0061 21 1 -0.4851 0.8401 0.0004 22 1 0.9909 -2.4820 -2.1407 23 1 -0.3679 -1.7789 -1.2287 24 1 -0.9962 -4.0166 -0.4023 25 1 -0.9414 -4.0156 -2.1821 26 1 0.1878 -6.0214 -1.2434 27 1 1.3360 -4.9815 -2.1198 28 1 2.7971 -6.1257 1.1308 29 1 1.9008 -6.9962 -0.1369 30 1 2.8643 -3.6159 0.8896 31 1 2.8791 -3.5947 -0.8900 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107467767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:09 Heat of formation + Delta-G solvation = -173.083675 kcal Electronic energy + Delta-G solvation = -18179.371349 eV Core-core repulsion = 14851.692174 eV Total energy + Delta-G solvation = -3327.679175 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.17652 -48.64702 -48.62212 -39.82030 -35.81067 -33.77815 -31.72124 -29.47843 -26.97323 -25.08907 -23.33689 -23.09209 -20.73308 -19.57977 -19.44679 -18.46767 -18.04395 -16.81122 -16.16876 -15.96936 -15.68884 -15.35845 -15.11249 -14.99444 -14.88314 -14.75114 -14.30909 -14.15685 -14.06538 -13.40359 -13.04929 -12.97457 -12.82184 -12.52013 -12.47739 -11.83053 -11.65252 -11.40600 -10.93091 -10.68489 -10.38361 -9.38894 -8.08601 -6.22244 1.41251 1.42196 1.49896 1.84798 2.41347 2.68383 2.91570 3.08634 3.18473 3.38446 4.08425 4.13527 4.31086 4.40233 4.52981 4.61055 4.73157 4.90869 4.96720 5.06401 5.14866 5.36589 5.49158 5.63112 5.83186 6.04629 6.07156 6.16812 6.41334 6.89116 7.45319 8.95835 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.034182 B = 0.008131 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.957307 B = 3442.776311 C = 3959.343789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.048 0.952 9 C 0.052 3.948 10 H 0.002 0.998 11 C -0.107 4.107 12 C -0.111 4.111 13 C 0.041 3.959 14 N -0.528 5.528 15 C 0.021 3.979 16 C 0.410 3.590 17 F -0.194 7.194 18 F -0.187 7.187 19 F -0.192 7.192 20 C 0.066 3.934 21 H 0.261 0.739 22 H 0.018 0.982 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.136 0.864 29 H 0.148 0.852 30 H 0.064 0.936 31 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 -13.330 -1.618 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.066 0.934 9 C 0.033 3.967 10 H 0.020 0.980 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.086 4.086 14 N -0.249 5.249 15 C -0.110 4.110 16 C 0.353 3.647 17 F -0.176 7.176 18 F -0.169 7.169 19 F -0.174 7.174 20 C -0.061 4.061 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.064 0.936 28 H 0.153 0.847 29 H 0.166 0.834 30 H 0.083 0.917 31 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.963 -13.194 -1.233 13.579 hybrid contribution 1.195 1.332 -0.860 1.986 sum 4.157 -11.862 -2.093 12.743 Atomic orbital electron populations 1.70008 1.07038 1.27159 1.51059 1.25677 0.95677 1.02179 0.94769 0.85719 0.78496 0.79331 0.78757 1.19943 1.20732 1.19629 1.21467 0.92889 0.92264 1.51008 0.93350 1.18611 0.92931 0.91176 0.94006 0.98011 1.21493 0.99150 0.96681 0.97208 1.21585 0.97482 0.94428 1.01337 1.22550 0.95462 1.00152 0.90410 1.62149 1.22062 1.01593 1.39129 1.23986 0.88691 0.98563 0.99746 1.22751 0.86658 0.73355 0.81890 1.93183 1.78915 1.55057 1.90417 1.93158 1.76943 1.50252 1.96532 1.93097 1.87504 1.94702 1.42073 1.22430 0.95602 0.88513 0.99559 0.92995 0.96281 0.92197 0.92580 0.90943 0.87905 0.93567 0.84655 0.83390 0.91725 0.95429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.15 11.35 21.45 0.24 -52.91 16 2 C 0.02 0.90 5.30 84.66 0.45 1.35 16 3 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.54 -30.25 8.56 25.60 0.22 -30.03 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 9 C 0.05 2.62 2.26 -11.49 -0.03 2.60 16 10 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 11 C -0.11 -5.13 5.02 30.67 0.15 -4.97 16 12 C -0.11 -4.08 6.09 30.65 0.19 -3.90 16 13 C 0.04 1.28 5.03 86.32 0.43 1.71 16 14 N -0.53 -17.35 4.86 -896.36 -4.35 -21.71 16 15 C 0.02 0.49 5.74 86.30 0.50 0.98 16 16 C 0.41 11.30 2.83 71.98 0.20 11.50 16 17 F -0.19 -6.46 13.94 44.97 0.63 -5.83 16 18 F -0.19 -4.67 17.32 44.97 0.78 -3.89 16 19 F -0.19 -5.86 13.84 44.97 0.62 -5.24 16 20 C 0.07 2.75 3.17 86.32 0.27 3.02 16 21 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 22 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.06 3.25 6.15 -2.39 -0.01 3.23 16 24 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 25 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.10 2.43 7.95 -2.39 -0.02 2.41 16 27 H 0.05 1.50 5.57 -2.39 -0.01 1.49 16 28 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.15 2.41 7.85 -2.39 -0.02 2.39 16 30 H 0.06 2.69 7.77 -2.38 -0.02 2.67 16 31 H 0.03 1.21 5.70 -2.39 -0.01 1.19 16 Total: -1.00 -62.08 253.93 3.47 -58.61 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: 1.13 Total: 2.43 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 2.39 Total: -17.73 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -4.11 Total: -74.61 kcal Atomic # 9 Polarization: -16.98 SS G_CDS: 2.03 Total: -14.96 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -62.08 3.47 -58.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107467767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.471 kcal (2) G-P(sol) polarization free energy of solvation -62.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds